Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq725 140 7e-28 seq1378 136 9e-27 >seq725 Length=5509020 Score = 140 bits (154), Expect = 7e-28 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || |||||||| || || || || ||||| || | || || | ||||||||| Sbjct 5362525 ACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCC 5362466 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| ||||||||||| || || || Sbjct 5362465 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGG 5362406 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| ||| ||||| ||||| | ||| Sbjct 5362405 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGTTCGACTTCCAGGGTGATGGTC 5362349 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || || || | ||||| Sbjct 5362348 TTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362317 Score = 136 bits (150), Expect = 9e-27 Identities = 167/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || | |||||| || || || || ||||| || | ||| || Sbjct 5362082 TCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGT 5362023 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| ||||| ||||| || | || || ||||| |||||||| Sbjct 5362022 GCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCC 5361963 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095 ||| || || || || || |||||| ||||| |||||||| ||| || ||||| Sbjct 5361962 TTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCAACTTC 5361906 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||||| | ||||| || || | || || ||||| | ||||||| Sbjct 5361905 AAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTT 5361859 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || | |||||| || || || || ||||| || | || || Sbjct 5362310 TCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGT 5362251 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| ||||| ||||| || | ||||| || || |||||||| Sbjct 5362250 GCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCC 5362191 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| || || || || || ||| || |||||||||||||| ||| || ||||| Sbjct 5362190 TTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTC---ACTGGGCTCAACTTC 5362134 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| |||||||| || || || || | ||||| Sbjct 5362133 CAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362089 >seq1378 Length=1736952 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||||| || || || || ||||| |||| || || | ||||||||| Sbjct 707950 ACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 707891 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || || || || || ||||| || Sbjct 707890 AGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGG 707831 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| |||||| |||||||| | ||| Sbjct 707830 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCCACCTCAAGGGTGATGGTC 707774 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| || || || || | |||||| Sbjct 707773 TTGCCTGTCAGGGTCTTCACAAAGATTTGCAT 707742 Score = 111 bits (122), Expect = 3e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 |||| | || ||| || ||||| || || || || ||||| || | || || | ||| Sbjct 707498 CTCAGAGAAATGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 707439 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| |||||||| || || ||||| || | || || || |||||||||||||| ||| Sbjct 707438 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 707379 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTA 195102 || || || || ||| |||||||| |||||||| ||| ||||| || || || Sbjct 707378 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCGAGAGTG 707322 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||| || || || || | ||||| Sbjct 707321 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 707284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109269366571310