Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1268 116 3e-20 >seq1268 Length=965101 Score = 116 bits (128), Expect = 3e-20 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | |||||||| || ||||| || |||||||| || || ||||| Sbjct 654853 GTTACTAATGCCGTAGTGACTGTACCGGCCTATTTCAACGACTCACAGCGCCAGGCTACA 654794 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || || || || || || |||||||| || || ||| Sbjct 654793 AAAGATGCTGGAACCATTGCAGGGCTGAACGTCCTGCGAATCATCAATGAGCCAACAGCT 654734 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 |||||| | || ||||| || || ||| Sbjct 654733 GCTGCAATAGCCTATGGTCTGGACAAA 654707 Score = 95.1 bits (104), Expect = 1e-13 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || ||||| ||| ||||||||||| | ||| | || || Sbjct 655879 AGCTGTCGGAATTGATCTGGGCACCACCTATTCCTGTGTTGGTGTATTCCAACACGGGAA 655820 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||| |||||||| |||||| | || || ||| ||||| | ||||| Sbjct 655819 GGTGGAAATCATTGCAAATGATCAGGGTAACCGGACCACACCAAGCTATGTCGCCTTCAC 655760 Query 550111 GGAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTAC 550167 ||| || || | ||| | | |||||||| || || | |||| || || ||||| || Sbjct 655759 GGATACAGAGAGATTGA-TCGGTGATGCTGCCAAGAACCAAGTTGCAATG--AATCCAAC 655703 Query 550168 CAATACTATTTTTG 550181 ||| || |||||| Sbjct 655702 CAACACAGTTTTTG 655689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028506434265700