Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2593 118 9e-22 seq1723 87.8 1e-12 >seq2593 Length=513555 Score = 118 bits (130), Expect = 9e-22 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| |||||||| ||||||||||||||||| || || || ||||||| || Sbjct 10268 CATGTCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 10327 Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 10328 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 10386 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||| || ||||| | ||||| ||||||| ||||| || || Sbjct 10387 CCCAAATCTTCACACCCTTTGCAGAGAGTTCTTTGGCATTTGTAGAACC 10435 Score = 100 bits (110), Expect = 2e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 |||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 6890 TAGCCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 6949 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || ||||| || || |||||||||||||| || || || | || || | Sbjct 6950 CACTCCTAGTCCCATATCTCCAGACCTCTGGTAGAGTTGGCAAGACAATTCACCATTTAG 7009 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || || || || | | ||||||||||| | |||||| || Sbjct 7010 GACATAGAATTGGCAAAGAGCATGGCACGGAGGCAAAGCCATCAG 7054 >seq1723 Length=1009378 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||| |||||||| |||| || || |||||| ||| ||| | |||||| || || Sbjct 127571 TTGAGCTGTCTGCTGAGCACTATATTAATTCTGTCTTTCAAAGGACGATTCTTCTCAGGA 127630 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 127631 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 127678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408543248196890