Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq725 114 1e-20 seq1378 91.5 1e-13 >seq725 Length=5509020 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| || || || ||||| || | || || | |||| |||| ||||| ||| Sbjct 5362285 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 5362226 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| |||| | |||||||||||| ||||||||||| ||||| || || || || Sbjct 5362225 GCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTA 5362166 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | |||||| | || ||||| || |||| || ||||| || || || Sbjct 5362165 ACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTC 5362106 Query 101453 TTTACAAATATCTGCATG 101470 || ||||| ||||||||| Sbjct 5362105 TTCACAAAGATCTGCATG 5362088 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| || || || ||||| || | || || | |||| |||| || Sbjct 5362520 ATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTG 5362461 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| | ||| ||||| || ||||||||||| ||||| || || || Sbjct 5362460 CTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTT 5362401 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||| | ||| ||||| || |||| || ||||| || Sbjct 5362400 GGCCTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATGGTCTTGCCTGT 5362341 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||| Sbjct 5362340 CAAGGTCTTCACAAAGATCTGCATG 5362316 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| || || || ||||| || | | || | |||| |||| ||||| ||| Sbjct 5362057 GTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 5361998 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| |||| | ||| ||||| || ||||||||||| ||||| || || || || Sbjct 5361997 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 5361938 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | |||||| | || |||||||| |||| || ||||| || | || Sbjct 5361937 ACATTCTCGATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 5361878 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 5361877 TTCACGAAGATCTGCAT 5361861 >seq1378 Length=1736952 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || || ||||| || | | || | | || |||| ||| Sbjct 707486 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGC 707427 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| |||||||| ||||||||||| || || || || || Sbjct 707426 TTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTG 707367 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | ||||| || ||||||| || ||||| || Sbjct 707366 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTC 707307 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 707306 AGGGTCTTCACAAAGATCTGCAT 707284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396206293430010