Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq188 109 1e-18 seq2182 104 4e-17 seq1674 86.0 1e-11 >seq188 Length=444545 Score = 109 bits (120), Expect = 1e-18 Identities = 123/162 (76%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || || || |||||||||||| |||||| ||||||||||| ||| Sbjct 224524 GTGTACTCCACTATTTCCGTACAGAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 224465 Query 213588 TTTGACTTTGCGTTGGCAGAA-TCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || ||| ||| | |||| | |||||||| ||||||||||| | ||||||||| ||| Sbjct 224464 TTGCTCTT-GCGGTTGCAGGAGTCCTTGTAAAGCATGTAGGGCGTGCCGGTCTCTGTCTG 224406 Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688 ||| | | || | |||||| | | |||||| ||||| Sbjct 224405 AGACTCAATGATTGCGTACCAGAGCTGCTGGGCCTTCACCAC 224364 >seq2182 Length=1878082 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||| ||||| || ||||| | | ||||| || || Sbjct 1867437 AGCACCTTCTGCTTGAGCTGGGCGACCTGCTCGCGCAGGAGGCTGGCGGTGGAGGCCAAC 1867496 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| ||||||||||| || | ||| | |||||| Sbjct 1867497 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATCCTCTCCAGT 1867556 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | ||||| |||| ||||| | ||| |||| || | || | ||||||||| Sbjct 1867557 TTCCTCTTACGGCACTTGGAAGCTGCGATGCGATTCCTCAGCCGTTTCCTCTCCGCCTTG 1867616 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| ||||| ||||||||||| || || Sbjct 1867617 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGA 1867648 >seq1674 Length=4410459 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 |||||||| |||| || ||| ||| |||||||| | || || | || ||||| ||| Sbjct 1955031 CTGATGAGTTCGTTAGAAAAGGTGAGTCCAGGCATTAGTCCTCTTTTCTTCAGCCAAAAA 1955090 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| || ||||||||||| |||||||| || |||||||| || || || Sbjct 1955091 ATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 1955140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931358952691200