Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq188 100 5e-16 >seq188 Length=444545 Score = 100 bits (110), Expect = 5e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || |||| || ||||||||| || || ||||| || || || || || Sbjct 222648 CTGGTTGGTTTCAACCCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTC 222589 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||| ||| ||| |||| ||| | || || | ||||| || ||||| Sbjct 222588 TCTGGCTCGCTGCTCTTCCTTCCCGGTGTTCTTCTTTAGGTCAAGGAACTCGAAGATGTC 222529 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 |||||| ||||||||||||| ||| | ||| || |||| || ||| Sbjct 222528 CAAGTGCCATGGCTCCAGATAGATGGCAAAAGCCCCAGGTCTCTGGTT 222481 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| || ||| |||| |||| | || || ||||||||||||||||| |||||||| Sbjct 224539 ACCTCATCTTTGCTGGTGTACTCCACTATTTCCGTACAGAGGTTGCTGCATTTGATGGTT 224480 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | || || |||||| ||| | ||||||||| ||||| |||| | Sbjct 224479 CCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAAAGCATGTAGGGCGTG 224420 Query 221852 CCAGTCTCCAGCTGAG 221867 || ||||| ||||| Sbjct 224419 CCGGTCTCTGTCTGAG 224404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928671454339200