Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1268 113 3e-19 seq2829 86.0 4e-11 >seq1268 Length=965101 Score = 113 bits (124), Expect = 3e-19 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| Sbjct 653186 GGTATTCCTCCTGCTCCCAGAGGTGTTCCTCAGATTGAAGTAACGTTTGATATTGATGCC 653127 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || |||||| ||||| ||||| Sbjct 653126 AATGGCATCCTGAATGTTTCTGCTGTGGATAA 653095 Score = 100 bits (110), Expect = 2e-15 Identities = 155/216 (72%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 474511 TATTTTT---GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 ||||||| ||||| || | |||||||| |||| ||||||||| | ||||||||| Sbjct 655155 TATTTTTACAGATGCAAAGCGGTTGATTGGGCGTAGATTTGATGATTCTGTTGTCCAATC 655096 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA-- 474625 ||| ||| || |||||||| | ||| | |||| || ||| | |||| | | || Sbjct 655095 TGACATGAAGCACTGGCCTTTCACTGTGGTGAATGATGCTGGCAGACCAAAAGTCCAAGT 655036 Query 474626 GCAATACACGCAGGTGAAACTAAACAATTT-TCACCGGAACAAATTTCTTCAATGGTTTT 474684 | | |||| | || || || ||| | ||| | || ||| |||||||||| |||||||| Sbjct 655035 GGAGTACAAG--GGCGAGAC-AAAGAGTTTCTACCCAGAAGAAATTTCTTCCATGGTTTT 654979 Query 474685 AGCCAAAATGAAACAAACCGCGAGCTCATATCTTGG 474720 | |||||||||| ||| || |||||||||| Sbjct 654978 AACCAAAATGAAGGAAATTGCAGAAGCATATCTTGG 654943 >seq2829 Length=2027494 Score = 86.0 bits (94), Expect = 4e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||||||||| ||| || | ||||| || || Sbjct 1434366 CCATCACGACCAGCTCTCCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCG 1434307 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || ||||||||||| ||||| || || Sbjct 1434306 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAACGCAATCGTAGCC 1434247 Query 627889 AC 627890 || Sbjct 1434246 AC 1434245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267538779859640