Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1708 250 3e-61 seq722 201 1e-46 >seq1708 Length=3341979 Score = 250 bits (276), Expect = 3e-61 Identities = 653/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| |||| || || |||| ||||| || || || |||||| || || || | Sbjct 3168205 TGTGCCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTATCAAACT 3168264 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | |||||| ||| |||| ||||||| || |||||| | ||| || | Sbjct 3168265 TATTAGCAAAGAAATGGTG---GTTACGTAGCATCCAGTTCAGGTCTCCTGCCCCAAAAA 3168321 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| || || || | || ||||| | ||||| Sbjct 3168322 CACAGACAGACCGAACGTGAACTCCACTGCATGGTGGATAGGGTGCACCTTTAGACACGT 3168381 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || ||||| Sbjct 3168382 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACGTCGT 3168441 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | || | || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 3168442 ACTTAT-CACTAGAAGAAACTGCACCAGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 3168500 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 || | || || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 3168501 AGATACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTACTG 3168560 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || | || | |||| | || ||||| || || || || || || Sbjct 3168561 CTTTCTAATACATATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 3168620 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | | |||||| || ||||| | || || Sbjct 3168621 ATTGGAGTACTGAGAGGTGGTGGTTGTTTGTCTGCGCCTGTGTTCTTTATTTTACCATTG 3168680 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 3168681 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCC 3168740 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 3168741 AAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 3168800 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 3168801 GGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 3168860 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||||||||||||||| | |||||| ||||| || || || ||||| Sbjct 3168861 TCTTTCATGCAGTTAATATCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCT 3168920 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | || | | |||||||||||| |||||||| || |||||| ||| | |||||| Sbjct 3168921 AACTGGCTAGAAATAAAGACGTTATCAAAACACGAGACTATTCCCTTCACAG-CAGAAAA 3168979 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | || || | |||||||| || ||||| Sbjct 3168980 AAAAGATTCTGGAGACTTTTTGTCAACATGAATACAGTAGAAATTCTGAGGAGCATAGAT 3169039 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 3169040 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 3169099 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || | || || | || || | | | | ||| || | |||||| | || Sbjct 3169100 TGGAAATTCTGCTTCTTCACTGCTGAGAGGTTCCATGATGTATTTCCTAGTCTTGGTGAA 3169159 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || |||||||| ||||| Sbjct 3169160 GGAGGCACAGTCTGCTGTCATGTTAATATA 3169189 >seq722 Length=1527175 Score = 201 bits (222), Expect = 1e-46 Identities = 619/938 (66%), Gaps = 36/938 (4%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACA-CGTCAACGTCTTCGTCGAATTT 160105 || ||||| || || |||||||| |||| ||| |||| |||| || || ||| || || Sbjct 104198 TGGCGCAGGTGCTCCTCCAGACACTGGATGGC-AACATCGTCTACCTCGGGGTCAAACTT 104256 Query 160106 ATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACAC 160165 || || || | ||||| | ||| || ||||| |||| ||| || | |||| | | Sbjct 104257 GTTGGCCAAGAAGTGGTGT---TGCTGGAGCATCCATTGCAGGTCGCCTGCCCCGTAGAT 104313 Query 160166 GCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTC 160225 ||||||||| || ||| |||| |||| |||||||| | || ||||| ||| Sbjct 104314 GCAGACGGAGCGCTGGTGGCGGCCGGTGCAGGGCGGGTAGGGCGCACCTTTGCTGGTGTC 104373 Query 160226 ACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTA 160285 || || | |||||||||||| || | | || | || | |||||| || ||||| Sbjct 104374 GCCCTCCTGGTACTGCCACTTGACCAGGCGTGCCAGGGCGTTCATGTCCGACAGCTCGTA 104433 Query 160286 TTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 ||| || |||| |||||| || ||||| || || || | ||||||||||| | Sbjct 104434 CTTGGCATTCTGGGGTGTGGCACCTGGCACGCCAGGAATGCGGTTGAGGGTGGCCCAAAC 104493 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT--- 160402 ||| ||||| |||||||| |||||||| ||||| |||| ||||| | | || | | Sbjct 104494 GTGCTCGTCAGGGCTGTAGGTGTCCTTGGACCACTCCAAGAACT-GCTG--TACCGTGGG 104550 Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 ||| | ||||| ||| ||| | ||||| || | ||||||| |||| | ||| Sbjct 104551 GTCTTTGAAGACGTGCTGCACGAAGGCCCGCGTCACCACTATGTACGCGTTGCCCGTGAA 104610 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGAC--ACCACTCCT 160520 || || | | || |||| | | || |||||| | | | | | | Sbjct 104611 CATGGGGGACCGGAGGGGTGGCG-GCCGTT----TGACCGTGGCTGTCCTGAAGATTGAA 104665 Query 160521 TTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT-TCCGT 160579 ||| ||| | || | | | ||| | | ||| | || | || | || | Sbjct 104666 TTCCCCACGGTGTAGTGGTAGTGCCAGCGCTTCTGCTT-TAAGGCTGAGGGCTTCTCTGA 104724 Query 160580 CTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTT-GACGATCTCTAGGTTCGTCT 160638 ||| || ||||| |||| ||| | ||||| |||| ||||||||| ||| |||| Sbjct 104725 CTCCAGGCTGTTCCGCCCGTGCAGCAACTTCAG-GGCTTGGACGATCTCGGCGTTGGTCT 104783 Query 160639 TGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC-G 160697 ||| || || ||||| || || ||| | | ||| ||| || || |||| | Sbjct 104784 TGATGGGGAAATCGGTGCCACAGGTGTTGAGGAGGTAGCGCCA---CG-GCACAGGACTC 104839 Query 160698 TG---CAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACT 160754 || ||||||| |||| || || | || ||||||| || ||| || ||||| ||| Sbjct 104840 TGCAACAGGTCCTTCATACAGTTGAGGTCGGCCTGCAGCCGCGACCACGAGGCGTAGACT 104899 Query 160755 ACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGAT---TCCCACC 160811 || ||||| || |||||||| ||||| || ||| || | |||| || ||| Sbjct 104900 ACCTTCTCCAGGCGGCTGGCCACGAAGACATTGGGGAAGCAGGCGGCGATGGCTCGCACG 104959 Query 160812 ACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871 || || | ||| || || ||| ||||| ||||| | ||| || | ||| || Sbjct 104960 GCCTCCTGGAAGTCGGTC---GGCGACTTGCGGTCAACGTGGATGCAGTAGACGTTTTGC 105016 Query 160872 GGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATA 160931 || ||||||| || || || | || |||||||||||| ||||| | ||||| || || Sbjct 105017 GGTGCGTAGACGGACCGCAGGAGCCGCTCGAACATCTCGATCTTGTTGTGGATGACCATG 105076 Query 160932 GAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 |||||||| || || ||||| | |||||| | ||||| Sbjct 105077 GAGTAGGCGATGGGGAACTCTGCCTCCTCCCTGCTCAG 105114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577111476466800