Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq188 82.4 9e-11 >seq188 Length=444545 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || || || |||||||||||||| | || ||| ||||| Sbjct 224403 TCTCAGACAGAGACCGGCACGCCCTACATGCTTTACAAGGACTCCTGCAACCGCAAGAGC 224462 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| ||||||| ||||| || || || || |||||||| | |||||| Sbjct 224463 AACCAGCAGAACCTGGGAACCATCAAATGCAGCAACCTCTGTACGGAAATAGTGGAGTAC 224522 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 224523 ACCAGCAAAGATGAG 224537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596458265198400