Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq725 86.0 1e-11 >seq725 Length=5509020 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | ||| ||||| | || || ||| || || ||| Sbjct 5362318 ATGCCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCA 5362259 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||||||||| || Sbjct 5362258 GAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGG 5362199 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || || || ||||| || | || | || Sbjct 5362198 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCA 5362139 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || || || || || || | ||| |||||||| Sbjct 5362138 ACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362089 Score = 84.2 bits (92), Expect = 4e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||| || || || | || | ||| | ||| | || || ||| || || |||| Sbjct 5362545 TACCACCCCTCAGGCGCAGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAG 5362486 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || || |||| |||| || || ||||||||||| | ||||| ||||| || | Sbjct 5362485 AGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGG 5362426 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| ||||| || || || || ||||| || | || | ||| | Sbjct 5362425 GAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCGA 5362366 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || || ||||| || || || || || || | ||| |||||||| Sbjct 5362365 CTTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984291678205500