Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1386 176 5e-38 seq1154 107 2e-17 seq138 107 2e-17 seq188 93.3 5e-13 >seq1386 Length=165596 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 27053 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 26994 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 26993 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 26934 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| || ||||||| ||| | |||| ||||||||| |||||||| Sbjct 26933 TGTCGTTGACAAAGGAATTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 26874 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 26873 GCACCTGCTTCAGCACCTTGTA 26852 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 70215 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 70156 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 70155 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 70096 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| || ||||||| ||| | |||| ||||||||| |||||||| Sbjct 70095 TGTCGTTGACAAAGGAATTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 70036 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 70035 GCACCTGCTTCAGCACCTTGTA 70014 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 130027 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 129968 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 129967 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 129908 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 129907 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 129848 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 129847 GCACCTGCTTCAGCACCTTGTA 129826 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 1716 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1775 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 1776 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 1835 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1836 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1895 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1896 GCACCTGCTTCAGCACCTTGTA 1917 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 41326 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 41267 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 41266 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 41207 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | ||| ||||||||| |||||||| Sbjct 41206 TGTCGTTGACAAAGGAGTTCATGATACTCATGGCTTTGGACGAGATGCCCGTGTCGGGGT 41147 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||| ||||| Sbjct 41146 GCACCTGCTTCAGCACTTTGTA 41125 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 48229 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 48170 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 48169 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 48110 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||| | || ||||||| ||| | |||| ||||||||| |||||||| Sbjct 48109 TGTCGTTGACAGAGGATTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 48050 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 48049 GCACCTGCTTCAGCACCTTGTA 48028 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 151453 GCTTGGCCAGCTCACCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 151394 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 151393 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 151334 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| || ||||||| ||| | |||| ||||||||| |||||||| Sbjct 151333 TGTCGTTGACAAAGGAATTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 151274 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 151273 GCACCTGCTTCAGCACCTTGTA 151252 >seq1154 Length=3633959 Score = 107 bits (118), Expect = 2e-17 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | ||| ||||| || ||||| || || || | | || Sbjct 851369 GCTTGGCCAGCTCTCCTGGAAGCAGCAGACGCACAGCAGTCTGAATTTCCCGGGAGGTGA 851310 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| || || |||| || || | | Sbjct 851309 TGGTGGAGCGCTTGTTGTAATGAGCCAGGCGGGAAGCTTCTCCAGCGATACGCTCAAAGA 851250 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 851249 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGGT 851190 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 851189 GGACCTGCTTCAGCACCTTGTAGA 851166 >seq138 Length=13015 Score = 107 bits (118), Expect = 2e-17 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| | ||||||| | | | || || || || || |||||||| |||| | || Sbjct 9121 GCTTGGCTAATTCGCCGGGTAAAAGGAGCCGAACCGCTGTTTGGATCTCCCGCGAGGTGA 9180 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| |||| |||| || || || ||||||| |||| | Sbjct 9181 TGGTGGAGCGTTTGTTGTAGTGAGCCAAGCGCGAAGCTTCCCCTGCGATGCGCTCGAAGA 9240 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| || ||||||| ||| | |||| ||| ||||| |||||||| Sbjct 9241 TGTCGTTGACAAAGGAATTCATGATGCCCATAGCCTTGGAGGAAATGCCGGTGTCGGGGT 9300 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||| || ||||| ||||||| Sbjct 9301 GAACCTGTTTCAGCACTTTGTAGA 9324 >seq188 Length=444545 Score = 93.3 bits (102), Expect = 5e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||||| ||| || || || || ||||||||||| ||||| ||||| ||||||||||||| Sbjct 221011 CGGCAAGGCCAATCCCACCAGCAGACTTGGAGATCAGCGCACACTGCTTGAGCGTGTCGT 220952 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATG 1630263 |||| ||||| || |||| |||||||| Sbjct 220951 AGATTCCCTCAATGCTGTCGTCCTTCATG 220923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105913974282810