Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1378 123 2e-23 seq725 105 6e-18 >seq1378 Length=1736952 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || ||||| || ||||| || || ||| Sbjct 707514 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTCGAGGTGGAGCCCAGT 707573 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 707574 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 707633 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| || |||||||| ||| | | | |||| ||||| ||| Sbjct 707634 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCTTGTCTGATTACAAC 707693 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | || |||| |||| || ||| Sbjct 707694 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGGC 707741 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 707283 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTGGAGCCCAG 707342 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || ||||||||||| Sbjct 707343 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 707402 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| || | | | | |||| || || || Sbjct 707403 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 707462 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || |||||||| || || ||| Sbjct 707463 CATCCAGAAGGAATCCACCCTCCAC 707487 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || ||| ||| Sbjct 707970 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCCAGT 708029 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 708030 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 708089 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||||| |||||||| ||| | | | | |||| || || ||| Sbjct 708090 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 708149 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | || |||| |||| || ||| Sbjct 708150 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGGC 708197 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || || || || || || ||| ||| Sbjct 707742 ATGCAAATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTGGAACCCAGT 707801 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 707802 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAG 707861 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||||| |||||||| ||| | | | | |||| || || ||| Sbjct 707862 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 707921 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | || |||| |||| || ||| Sbjct 707922 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGGC 707969 >seq725 Length=5509020 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || ||||| || ||| Sbjct 5362089 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 5362148 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || ||||||||| Sbjct 5362149 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGATCAA 5362208 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | | || || || ||| Sbjct 5362209 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 5362268 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || | || | ||| |||| || | || ||| Sbjct 5362269 ATCCAGAAGGAATCCACTTTGCATCTTGTGCTGCGCCTGAGAGGTGGC 5362316 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || ||||| ||| ||| Sbjct 5362317 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAAGTCGAACCCAGT 5362376 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 5362377 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAG 5362436 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | | || || || ||| Sbjct 5362437 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 5362496 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || || | ||| |||| Sbjct 5362497 ATCCAGAAGGAATCCACTCTGCATCTTGTGCTGCG 5362531 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || ||||| || ||| Sbjct 5361861 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAAGTTGAGCCCAGT 5361920 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 5361921 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAG 5361980 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | | || || || ||| Sbjct 5361981 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCTGACTACAAC 5362040 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || | || | ||| |||| || | || ||| Sbjct 5362041 ATCCAGAAGGAATCCACTTTGCATCTTGTGCTGCGCCTGAGAGGTGGC 5362088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449813637860400