Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1386 224 2e-52 seq1154 161 2e-33 seq2320 143 4e-28 seq138 138 2e-26 >seq1386 Length=165596 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 41365 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 41306 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 41305 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 41246 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||||||||| ||||||| Sbjct 41245 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAAGGAGTTCA 41186 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| |||||||||||||||||| ||||| |||| Sbjct 41185 TGATACTCATGGCTTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACTTTGT 41126 Query 1485710 AAAC 1485713 | || Sbjct 41125 ACAC 41122 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 27092 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 27033 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 27032 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 26973 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||||||||| || |||| Sbjct 26972 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAAGGAATTCA 26913 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 26912 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 26853 Query 1485710 AAAC 1485713 | || Sbjct 26852 ACAC 26849 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 70254 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 70195 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 70194 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 70135 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||||||||| || |||| Sbjct 70134 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAAGGAATTCA 70075 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 70074 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 70015 Query 1485710 AAAC 1485713 | || Sbjct 70014 ACAC 70011 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 130066 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 130007 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 130006 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 129947 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||| ||||| || ||||||| Sbjct 129946 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCATTGACGAAGGAGTTCA 129887 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 129886 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 129827 Query 1485710 AAAC 1485713 | || Sbjct 129826 ACAC 129823 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 1677 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 1736 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1737 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1796 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||| ||||| || ||||||| Sbjct 1797 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCATTGACGAAGGAGTTCA 1856 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1857 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1916 Query 1485710 AAAC 1485713 | || Sbjct 1917 ACAC 1920 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48268 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 48209 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 48208 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 48149 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||||||| | || |||| Sbjct 48148 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAGAGGATTTCA 48089 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48088 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48029 Query 1485710 AAAC 1485713 | || Sbjct 48028 ACAC 48025 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 151492 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCACCGGGCA 151433 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 151432 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 151373 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||||||||| || |||| Sbjct 151372 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAAGGAATTCA 151313 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 151312 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 151253 Query 1485710 AAAC 1485713 | || Sbjct 151252 ACAC 151249 Score = 102 bits (112), Expect = 1e-15 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 138169 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCACCGGGCA 138110 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 | ||| |||||||| ||||||||||| || | | ||| ||| Sbjct 138109 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGGGATGGTG 138066 >seq1154 Length=3633959 Score = 161 bits (178), Expect = 2e-33 Identities = 188/254 (74%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||||||||||||||| ||||| ||||| |||||| ||||||| || || | | Sbjct 851406 TACTTGGTGACGGCCTTGGTGCCCTCCGAGACAGCGTGCTTGGCCAGCTCTCCTGGAAGC 851347 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | ||| ||||| || ||||| || || |||| | ||| ||| ||||||||| | Sbjct 851346 AGCAGACGCACAGCAGTCTGAATTTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAATGA 851287 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||||||| || || |||| || || | ||||| ||||| || ||||||||| Sbjct 851286 GCCAGGCGGGAAGCTTCTCCAGCGATACGCTCAAAGATGTCATTGACGAAGGAGTTCATG 851227 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| ||||||||| ||| ||||| |||||||| ||||||||||| Sbjct 851226 ATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGGTGGACCTGCTTCAGCACCTTGTAG 851167 Query 1485712 ACAAAGGACGAGTA 1485725 ||| || ||||| Sbjct 851166 ACATAGATGGAGTA 851153 >seq2320 Length=335985 Score = 143 bits (158), Expect = 4e-28 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 50961 TGTACTTGGTGACAGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 50902 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | || || ||||| | ||| ||| || ||| ||| ||| | ||| || | Sbjct 50901 GCAGGAGCCTGACAGCCGTCTGCACCTCACGGCTGGTGATGGTGGAGCGGTGGTT-GTAC 50843 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| ||||| | | | | || |||| ||||| ||||| || |||||| Sbjct 50842 TGGGCCAGGCGCGACGCCTCCGAGGCCAGACGCTCGAAAATGTCATTGACGAAGGAGTTC 50783 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | ||| ||||||||| ||| |||||||||||| Sbjct 50782 ATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGCACCTGC 50735 >seq138 Length=13015 Score = 138 bits (152), Expect = 2e-26 Identities = 177/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || |||||||| || || ||||| |||||||||||| |||| | ||||||| | | Sbjct 9082 TGTATTTAGTGACGGCTTTAGTGCCCTCGGAGACGGCGTGCTTGGCTAATTCGCCGGGTA 9141 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || || |||||||| || | | ||| ||| ||| ||||| | Sbjct 9142 AAAGGAGCCGAACCGCTGTTTGGATCTCCCGCGAGGTGATGGTGGAGCGTTTGTTGTAGT 9201 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || || ||||||| |||| |||||||||||||| || |||| Sbjct 9202 GAGCCAAGCGCGAAGCTTCCCCTGCGATGCGCTCGAAGATGTCGTTGACAAAGGAATTCA 9261 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||| ||||| ||||||||| ||||| || ||||| |||| Sbjct 9262 TGATGCCCATAGCCTTGGAGGAAATGCCGGTGTCGGGGTGAACCTGTTTCAGCACTTTGT 9321 Query 1485710 AAAC 1485713 | || Sbjct 9322 AGAC 9325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914658227804270