Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq725 122 7e-23 >seq725 Length=5509020 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||||| | ||| | |||||||| || || ||||| || || | | Sbjct 5362087 CCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAA 5362028 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | |||| || |||||||| || ||| Sbjct 5362027 AGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGA 5361968 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || |||||| | || | |||||| | || ||| Sbjct 5361967 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACT 5361908 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || |||||||| | ||| || || || ||||||||||| Sbjct 5361907 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 5361858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385149105755130