Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1268 107 1e-17 seq2829 102 6e-16 >seq1268 Length=965101 Score = 107 bits (118), Expect = 1e-17 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| || ||||||||||| | |||| |||| | ||||| ||||| || |||| || Sbjct 655689 CAAAAACTGTGTTGGTTGGATTCATTGCAACTTGGTTCTTGGCAGCATCACCGATCA-AT 655747 Query 282750 GT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808 | ||||| || || || | ||||| ||| || || || ||||| |||||||| ||| Sbjct 655748 CTCTCTGTATCCGTGAAGGCGACATAGCTTGGTGTGGTCCGGTTACCCTGATCATTTGCA 655807 Query 282809 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 282868 || ||||| || || || | ||| ||||||| ||||| | | || || || | |||| Sbjct 655808 ATGATTTCCACCTTCCCGTGTTGGAATACACCAACACAGGAATAGGTGGTGCCCAGATCA 655867 Query 282869 ATACCAATAGC 282879 || || | ||| Sbjct 655868 ATTCCGACAGC 655878 >seq2829 Length=2027494 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || || || || ||||| ||||| || |||||| | ||| | | | ||||| Sbjct 1434241 TGTTGTGGCTACGATTGCGTTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 1434300 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 1434301 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 1434360 Query 131296 TGATGG 131301 |||||| Sbjct 1434361 TGATGG 1434366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739897400094180