Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1378 134 1e-26 seq725 107 2e-18 seq188 86.0 6e-12 >seq1378 Length=1736952 Score = 134 bits (148), Expect = 1e-26 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGT--ATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGA 133512 |||||| | |||||| || ||||| || ||||| || || ||| | ||| || | Sbjct 707491 AAATGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCA 707432 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| || | || |||| |||||| |||||||| |||||||||||||| || Sbjct 707431 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGA 707372 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | ||| | ||||| |||||||||| |||| |||| ||| |||| Sbjct 707371 TCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGC 707312 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || || || |||||||| Sbjct 707311 CAGTCAGGGTCTTCACAAAGATCTGCAT 707284 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || |||||||| || ||| | | | || || |||||||||| Sbjct 707711 GGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCA-TCTTCCAGCTGCTTGC 707653 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||||||| || ||||| || |||||||| |||||| || Sbjct 707652 CGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCT 707593 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| |||| |||| || ||||| ||||| | Sbjct 707592 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATAGTCTTGCCAGTCAGGG 707533 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 707532 TCTTCACAAAGATCTGCATG 707513 >seq725 Length=5509020 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| || | ||| | || || ||||||||||| Sbjct 5362057 GTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 5361998 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| || || || ||||||||||| || |||||| |||| Sbjct 5361997 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 5361938 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| ||||||| || || | ||||| ||| ||||| || || || Sbjct 5361937 ACATTCTCGATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 5361878 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 5361877 TTCACGAAGATCTGCAT 5361861 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| || | ||| | || || ||||||||||| Sbjct 5362285 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 5362226 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||| || ||||| || ||||||||||| || |||||| ||| Sbjct 5362225 GCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTA 5362166 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| |||| || Sbjct 5362165 ACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTC 5362106 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 5362105 TTCACAAAGATCTGCATG 5362088 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| || | ||| | || || ||||||||||| Sbjct 5362513 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 5362454 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| || || || ||||||||||| || |||||| |||| Sbjct 5362453 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 5362394 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| |||| || || || | ||||| ||| ||||| |||| || Sbjct 5362393 ACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTC 5362334 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 5362333 TTCACAAAGATCTGCATG 5362316 >seq188 Length=444545 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || || || | || || |||||||||||||| |||| ||||| || | Sbjct 224523 TGTACTCCACTATTTCCGTACAGAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 224464 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||||| |||||| | ||||||||| |||||||| || Sbjct 224463 TGCTCTTGCGGTTGCAGGAGTCCTTGTAAAGCATGTAGGG 224424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483330581593200