Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq722 109 6e-19 >seq722 Length=1527175 Score = 109 bits (120), Expect = 6e-19 Identities = 187/266 (70%), Gaps = 8/266 (3%) Strand=Plus/Plus Query 162722 ACAGATCCTGTAGACAGTTCAGATCGGCCTGGA--CGCGACTCCACGACGCGTACACGAC 162779 |||| |||| | |||||| || |||||||| | |||||| ||||| ||||| || || Sbjct 104844 ACAGGTCCTTCATACAGTTGAGGTCGGCCTGCAGCCGCGAC--CACGAGGCGTAGACTAC 104901 Query 162780 GCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGC 162839 |||||| | |||| || ||||||||| ||| || | | || | |||||| Sbjct 104902 CTTCTCCAGGCGGCTGGCCACGAAGACATTGGGGAAGCAGGCGGCGATGGCTCGCACGGC 104961 Query 162840 CAGTGAGAACATCGGGTCCGCT--TTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897 | ||| |||| || || || | || ||||| | |||||| | || || || Sbjct 104962 CTCCTGGAAG-TCGG-TCGGCGACTTGCGGTCAACGTGGATGCAGTAGACGTTTTGCGGT 105019 Query 162898 GCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAA 162957 ||||||| || || ||| | | |||||||||||| ||||| | ||| | || || || Sbjct 105020 GCGTAGACGGACCGCAGGAGCCGCTCGAACATCTCGATCTTGTTGTGGATGACCATGGAG 105079 Query 162958 TACGCTATGGGGAACTCAGCCTCCTC 162983 || || ||||||||||| |||||||| Sbjct 105080 TAGGCGATGGGGAACTCTGCCTCCTC 105105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578324050128000