Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq725 105 4e-18 seq1378 87.8 1e-12 >seq725 Length=5509020 Score = 105 bits (116), Expect = 4e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || |||||| |||| || | ||| | ||| |||||| || || || |||||||| || Sbjct 5362547 GTTACCACCCCTCAGGCGCAGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTC 5362488 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 ||||| ||||| | || |||| || || || ||||| |||| | |||||||||| | Sbjct 5362487 AGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 5362428 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATT 33697 || | ||||| || || || || || | ||| ||| |||||| || | || Sbjct 5362427 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGA-CATTCTCAATGGTGTCACTGGGTT 5362369 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || || ||||| || || || |||||||||||||| Sbjct 5362368 CGACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362317 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| || | ||| | ||| | |||| || || || |||||||| || ||| Sbjct 5362315 CCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAG 5362256 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | ||| ||||| | || Sbjct 5362255 AGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGGGGA 5362196 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| || || || || || ||||| ||| |||||| || | || || Sbjct 5362195 ATGCCTTCCTTATCCTGGATCTTGGCCTT-AACATTCTCAATGGTGTCACTGGGCTCAAC 5362137 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||| || || || |||||||||||||| Sbjct 5362136 TTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362089 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| || | ||| | ||| | |||| || || || |||||||| || || Sbjct 5362087 CCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAA 5362028 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||||||| | || Sbjct 5362027 AGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGA 5361968 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || || | ||| || | |||||| || | || || Sbjct 5361967 ATGCCTTCCTTATCCTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCAAC 5361909 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||||||||| Sbjct 5361908 TTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 5361861 >seq1378 Length=1736952 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| ||||| || ||||| | || |||| || || |||||||| Sbjct 708160 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAG 708101 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | |||||| || | || | || || ||||| || || |||| ||| Sbjct 708100 ATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCA-CATT 708042 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| || | |||||| |||| ||||| || || || || | || || || Sbjct 708041 CTCGATGGTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCAC 707982 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 707981 AAAGATCTGCAT 707970 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 33544 AAATGTAGAG--TGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCA 33601 |||||| ||| || || || || |||||||| || || || ||||| |||| |||| Sbjct 707491 AAATGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCA 707432 Query 33602 ATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAA 33661 || || |||||||| |||| | ||||||||| | || | ||||| ||||| | Sbjct 707431 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGA 707372 Query 33662 TTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 | || |||| | | || | |||||| || | ||||| || | ||||| || || Sbjct 707371 TCTTGGCCTTCA-CGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTG 707313 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||||||||| Sbjct 707312 CCAGTCAGGGTCTTCACAAAGATCTGCAT 707284 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||| || | |||||| | || |||| || || |||||||| Sbjct 707704 TCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAG 707645 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | |||||| || | || | || || ||||| || || ||| |||| Sbjct 707644 ATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATT 707586 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| || | ||||| || | ||||| || || || || | || || || Sbjct 707585 CTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATAGTCTTGCCAGTCAGGGTCTTCAC 707526 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 707525 AAAGATCTGCAT 707514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328644189225600