Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq188 89.7 5e-13 seq1378 84.2 2e-11 >seq188 Length=444545 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| ||||| | || |||||||||||||| ||| ||||| || ||||| | Sbjct 224523 TGTACTCCACTATTTCCGTACAGAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 224464 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| || || ||||| | ||| ||| | |||||||| || ||||||||| Sbjct 224463 TGCTCTTGCGGTTGCAGGAGTCCTTGTAAAGCATGTAGGGCGTGCCGGTCTC 224412 >seq1378 Length=1736952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || ||||||||||| || ||| ||| ||||| ||||| || |||| | Sbjct 707477 GATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCA 707418 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| |||||||| || || || || |||| Sbjct 707417 AAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 707358 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| |||| || | || || |||||||| || || Sbjct 707357 TTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTC 707298 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 707297 ACAAAGATCTGCAT 707284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476522252434800