Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1378 132 4e-26 seq725 114 1e-20 >seq1378 Length=1736952 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| | |||||| || | || ||||||||||| || ||||| Sbjct 707704 TCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAG 707645 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | || | | |||||||||| |||||| ||||| | | Sbjct 707644 ATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 707585 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| || || || |||| || |||||| Sbjct 707584 TCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACA 707525 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 707524 AAGATCTGCAT 707514 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 708160 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAG 708101 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | | |||||||||| |||||| ||||| | | Sbjct 708100 ATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 708041 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||||||||| | ||||| || || || |||| || |||||| Sbjct 708040 TCGATGGTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 707981 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 707980 AAGATCTGCAT 707970 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 707474 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAG 707415 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | ||||| || ||||||||| |||||| ||||| | Sbjct 707414 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 707355 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| || || || |||| || |||||| Sbjct 707354 TCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 707295 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 707294 AAGATCTGCAT 707284 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 707932 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAG 707873 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | | |||||||||| |||||| ||||| | | Sbjct 707872 ATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 707813 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||||||||| | ||||| || || || |||| || |||||| Sbjct 707812 TCAATGGTGTCACTGGGTTCCACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACA 707753 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 707752 AAGATTTGCAT 707742 >seq725 Length=5509020 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| ||| | || ||||||||||| || ||||| Sbjct 5362507 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 5362448 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||| ||| |||||| ||| | | | Sbjct 5362447 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 5362388 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||| || |||| ||||| || || || ||||| || |||||| Sbjct 5362387 TCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACA 5362328 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 5362327 AAGATCTGCAT 5362317 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| ||| | || ||||||||||| || ||||| Sbjct 5362279 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAG 5362220 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||| || || | |||| || ||||| ||| |||||| ||| | | | Sbjct 5362219 ATCAGCCTCTGTTGATCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTC 5362160 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || |||| ||||| || || || ||||| || |||||| Sbjct 5362159 TCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACA 5362100 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 5362099 AAGATCTGCAT 5362089 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| ||| | || ||||||||||| || ||||| Sbjct 5362051 TCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAG 5361992 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||| ||| |||||| ||| | | | Sbjct 5361991 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 5361932 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | ||||| || || || || | || ||||| Sbjct 5361931 TCGATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACG 5361872 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 5361871 AAGATCTGCATT 5361860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450709470644400