Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq725 113 5e-20 seq1378 105 7e-18 >seq725 Length=5509020 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| || || | ||||||||||| || ||||||||||| | Sbjct 5362087 CCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAA 5362028 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||||||||| |||| | ||||||||| || || Sbjct 5362027 AGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGA 5361968 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | || || Sbjct 5361967 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACT 5361908 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || ||||| || |||||||| Sbjct 5361907 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 5361858 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || || || |||| ||| || || || ||||||||||| || ||||||||||| Sbjct 5362546 TTACCACCCCTCAGGCGCAGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCA 5362487 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || Sbjct 5362486 GAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGG 5362427 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || || || || ||||| || | ||||| | ||| Sbjct 5362426 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCG 5362367 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || || || || || || || ||||| Sbjct 5362366 ACTTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362317 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| || || | ||||||||||| || ||||||||||| Sbjct 5362315 CCACCTCTCAGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAG 5362256 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||||||||| |||| | ||| |||||||| || Sbjct 5362255 AGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGGGGA 5362196 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | || || Sbjct 5362195 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCAACT 5362136 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || || || || ||||| Sbjct 5362135 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362089 >seq1378 Length=1736952 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||||||||| || ||||||||||| | |||| | ||| || ||||| Sbjct 707487 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 707428 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| |||| | |||||||||||| || |||||||| || || || || || Sbjct 707427 CTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 707368 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | ||||| | ||||| |||||||| ||||| || || || Sbjct 707367 GGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGT 707308 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || || || || || ||||| ||| Sbjct 707307 CAGGGTCTTCACAAAGATCTGCATCTTG 707280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||||||||||| || |||||||||||| | |||| | Sbjct 707959 AGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 707900 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || ||||| |||| | |||||| || || || || || || Sbjct 707899 CCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCC 707840 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| | |||||| || || || Sbjct 707839 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCAAGGGTG 707780 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || |||||||| Sbjct 707779 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATTTGCAT 707742 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||||||||||| || |||||||||||| | |||| | Sbjct 708187 AGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 708128 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || ||||| |||| | |||||| || || || || || || Sbjct 708127 CCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCC 708068 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| | |||||| || ||||| Sbjct 708067 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCAAGAGTG 708008 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 708007 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 707970 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| || ||||| || ||||||||||| || |||||||| || | ||| |||| | Sbjct 707731 AGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAA-GGTGCG 707673 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| ||||| | |||||| || || || || || || Sbjct 707672 TCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTC 707613 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||||| | ||||| |||||||| Sbjct 707612 CTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGT 707553 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || || || || ||||| Sbjct 707552 GATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 707514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505304080023600