Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1674 100 2e-16 seq1282 91.5 1e-13 seq2593 86.0 5e-12 >seq1674 Length=4410459 Score = 100 bits (110), Expect = 2e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 ||||| || ||||| ||||| || || |||||||| |||||||| ||||| ||||||||| Sbjct 1957174 GAAGCCCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCAGAAATGTAC 1957115 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| || || || ||||| |||||| Sbjct 1957114 AGTCTTCTCATTGACACCTACATTAAAGAT 1957085 >seq1282 Length=7422214 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| ||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 520147 AAAATCCTTTTGATTTCATGGAGAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 520206 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| |||||||||||| | | || ||| ||||| |||||| || | Sbjct 520207 AGCGGGTTTCAGAATATCAGCGGTTTGCTGTTATGGCAGAAACAATGGACAATGTCTTCA 520266 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 520267 CTCTGGATGCAGATTT 520282 >seq2593 Length=513555 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || || || || || ||||||||| ||| Sbjct 7053 TGATGGCTTTGCCTCCGTGCCATGCTCTTTGCCAATTCTATGTCCTAAATGGTGAATTGT 6994 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | || || || || || || ||||||||||| || || || || || || | Sbjct 6993 CTTGCCAACTCTACCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 6934 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || ||||| || || || || Sbjct 6933 GCTATTCACTGCTCACATACATGATAGCCCATGTCAC 6897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397383679154650