Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq188 86.0 8e-12 >seq188 Length=444545 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || |||||||| | ||||| ||||| | |||| | || || || || Sbjct 224537 CTCATCTTTGCTGGTGTACTCCACTATTTCCGTACAGAGGTTGCTGCATTTGATGGTTCC 224478 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| ||||| |||||| | |||||||| |||||||||||||| || Sbjct 224477 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAAAGCATGTAGGGCGTGCC 224418 Query 111385 CGTCTCCGTCTGTGA 111399 ||||| ||||| || Sbjct 224417 GGTCTCTGTCTGAGA 224403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627914793528000