Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq188 86.0 7e-12 >seq188 Length=444545 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 ||||||| || ||||| || || || |||||||||||||| ||| |||| |||| |||| Sbjct 224401 AGTCTCAGACAGAGACCGGCACGCCCTACATGCTTTACAAGGACTCCTGCAACCGCAAGA 224460 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 | || || |||| |||| ||||| | ||| |||||||| ||||| |||| | Sbjct 224461 GCAACCAGCAGAACCTGGGAACCATCAAATGCAGCAACCTCTGTACGGAAATAGTGGAGT 224520 Query 105024 TTACAGACAAAGATGAG 105040 || |||||||||| Sbjct 224521 ACACCAGCAAAGATGAG 224537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583151948953200