Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq188 86.0 7e-12 >seq188 Length=444545 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| | |||||||| |||||||||||||| |||||||| ||||||||| Sbjct 220906 AGCTGCTTCCTGCTATGCATGAAGGACGACAGCATTGAGGGAATCTACGACACGCTCAAG 220965 Query 19313 GAGTGCGCGCACATCTCCAAGT 19334 |||| |||| |||||||||| Sbjct 220966 CAGTGTGCGCTGATCTCCAAGT 220987 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 ||||||||||| ||| |||||| ||||||||| | ||||| ||||| | | || Sbjct 230660 GAACTCGCCGGAGAGGACTCGGCGCGTGTAGATGTTACTGGTGTAGGGCTCTATGGATTC 230601 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGG 78608 |||||| |||| ||||||||| || || || ||||||||||| Sbjct 230600 GTTGTTGCCCAGGATCTGGGCAGTAGAAGCAGTCGGCATGGG 230559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548422431559200