Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq2577 132 6e-26 >seq2577 Length=9266930 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || || |||| |||| |||||||||||| || |||||| | ||||| | |||||||| Sbjct 5340650 GCTTTATGGTGGTATTATATCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 5340591 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 |||| ||||||||||||||| | || || | || || || |||||||| |||||||| Sbjct 5340590 CTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 5340531 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || || | ||||| || ||||| ||| ||||||| ||||| Sbjct 5340530 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 5340490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603068231383200