Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq722 304 2e-77 >seq722 Length=1527175 Score = 304 bits (336), Expect = 2e-77 Identities = 676/997 (68%), Gaps = 28/997 (3%) Strand=Plus/Minus Query 13609 ACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATC-TCGTG 13667 ||||| | ||||||||| ||||||| | |||| | | ||| || | || ||| | Sbjct 105179 ACTACCTCAACATGACGAAGGACTGCGGGAGCTTCAAGGA-GACGCGGAGGTTCGTCGAG 105121 Query 13668 AGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727 || |||||| ||| |||| ||||| |||||||||||||| || || |||||| || Sbjct 105120 TTCCCGCTGAGCAGGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAAC 105061 Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 |||||||||||||||||||| |||||| || || ||||||| ||||| ||| |||||||| Sbjct 105060 AAGATCGAGATGTTCGAGCGGCTCCTGCGGTCCGTCTACGCACCGCAAAACGTCTACTGC 105001 Query 13788 GTCCACGTGGACTCCAAGTCCGGCGA-CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAG 13846 ||||||| ||| ||||| || ||| ||| ||| || ||| ||||||||| Sbjct 105000 ATCCACGTTGACCGCAAGT-CGCCGACCGACTTCCAGGAGGCCGTGCGAGCCATCGCCGC 104942 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAG 13906 |||||||| || || | ||||| ||| ||| | | || || |||| ||| || | Sbjct 104941 CTGCTTCCCCAATGTCTTCGTGGCCAGCCGCCTGGAGAAGGTAGTCTACGCCTCGTG--G 104884 Query 13907 TCGCG--TGCAGGCCGACCTCAGCTGCATGTCGGACCTG--GACGCCTCCCCCGTCAAGT 13962 ||||| ||||||||||||||| ||| ||| ||||||| | | | || || || Sbjct 104883 TCGCGGCTGCAGGCCGACCTCAACTGTATGAAGGACCTGTTGCAGAGT--CCTGTGCCGT 104826 Query 13963 GGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCG 14022 || | ||||| |||||| || || | || ||||| ||||||||||| ||||||| Sbjct 104825 GGCGCTACCTCCTCAACACCTGTGGCACCGATTTCCCCATCAAGACCAACGCCGAGATCG 104766 Query 14023 TGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCCCAA 14080 | | || |||||| ||| ||| |||| ||||||| || || | | | || Sbjct 104765 TCCAAGCCCTGAAGTTGCTGCACGGGCGGAACAGCCTGGAGTCAGAGAAGCC---CTCAG 104709 Query 14081 CC-ACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGT-GGTGGTC 14138 || |||| | | || | || | ||| | | | || | | | || Sbjct 104708 CCTTAAAGCAGAAGCG---CTGGCACTACCAC----TACACCGTGGGGAATTCAATCTTC 104656 Query 14139 AACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCT 14198 | || | || | ||| ||||| || ||| || |||||| || |||| ||||| Sbjct 104655 AGGACAGCCACGGTCAAACGGCCGCCACCCCTCCGGTCCCCCATGTTCACGGGCAACGCG 104596 Query 14199 TACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTG 14258 ||| | | ||| || |||| |||||| | |||| |||| ||| |||| | | Sbjct 104595 TACATAGTGGTGACGCGGGCCTTCGTGCAGCACGTCTTCAAAGACCCCACGGTACAGCAG 104536 Query 14259 CTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAG 14318 || || | |||| | ||||||| |||||||| ||||||||| | ||||||||| | | Sbjct 104535 TTCTTGGAGTGGTCCAAGGACACCTACAGCCCTGACGAGCACGTTTGGGCCACCCTCAAC 104476 Query 14319 AGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATG 14378 | || || ||| || | | ||| | | ||||||||| ||||||||| Sbjct 104475 CGCATTCCTGGCGTGCCAGGTGCCACACCCCAGAATGCCAAGTACGAGCTGTCGGACATG 104416 Query 14379 TGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCC 14438 ||| || | | ||||||||||| ||| | ||||| || | || ||||| || Sbjct 104415 AACGCCCTGGCACGCCTGGTCAAGTGGCAGTACCAGGAGGGCGACACCAGCAAAGGTGCG 104356 Query 14439 CTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGAC 14498 | |||||||| ||| |||| |||| | | || ||||||||| |||| | |||||| Sbjct 104355 CCCTACCCGCCCTGCACCGGCCGCCACCAGCGCTCCGTCTGCATCTACGGGGCAGGCGAC 104296 Query 14499 GTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGA 14557 || | ||| || ||| | | ||| | || ||||||||||| ||| |||| || Sbjct 104295 CTGCAATGGATGCTCCAGCAACAC-CACTTCTTGGCCAACAAGTTTGACCCCGAGGTAGA 104237 Query 14558 CGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| | ||| | | |||||||| ||| || ||||| Sbjct 104236 CGATGTTGCCATCCAGTGTCTGGAGGAGCACCTGCGC 104200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658616262796800