Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2593 123 2e-23 >seq2593 Length=513555 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| |||||||| | || || ||||| ||||| ||||| |||| Sbjct 6899 GACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCTAG 6958 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | || ||||| ||||| |||| || ||||| ||| ||||| Sbjct 6959 TCCCATATCTCCAGACCTCTGGTAGAGTTGGCAAGACAATTCACCATTTAGGACATAGAA 7018 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 |||||| || | |||||||| || | |||||||||| Sbjct 7019 TTGGCAAAGAGCATGGCACGGAGGCAAAGCCATCAGAG 7056 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 |||||||||| | || |||||||| | || ||||||||||| ||| ||||| || Sbjct 7056 CTCTGATGGCTTTGCCTCCGTGCCATGCTCTTTGCCAATTCTATGTCCTAAATGGTGAAT 6997 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| ||||| ||||| || | || ||||| ||||| |||| ||||| ||||| |||| Sbjct 6996 TGTCTTGCCAACTCTACCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTG 6937 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 | || || | |||||||| |||||||| || |||||| Sbjct 6936 CCAGCTATTCACTGCTCACATACATGATAGCCCATGTC 6899 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || ||||| || |||||||| Sbjct 10278 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 10337 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | ||| ||||| |||||| Sbjct 10338 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTC 10397 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | ||||| || |||| Sbjct 10398 ACACCCTTTGCAGAGAGTTCTTTGG 10422 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| || ||||| | ||| |||||||| ||||| ||| | || || || || || | Sbjct 10422 CCAAAGAACTCTCTGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTCC 10363 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| || ||||| || || || || |||| Sbjct 10362 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCC 10303 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || ||||| || || || Sbjct 10302 AGTGGAGGCATTTTGGAGCAGAATA 10278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448178743029600