Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq486 113 4e-20 >seq486 Length=3991569 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 ||||| || ||||| |||||||||||||| ||||| || | || || || || |||||| Sbjct 1837214 GTTGTGGAGGAGCTGTTCCGAGATGGGGTTAACTGTGGCAGGATCGTGGCATTATTTGAG 1837273 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 ||||| ||||| ||||| ||||| |||||||| | | || | ||||||| |||| | Sbjct 1837274 TTTGGCGGTGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTCGTGGACAGC 1837333 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| | |||||||| || Sbjct 1837334 ATCGCCACCTGGATGACCGA 1837353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414401382060520