Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1378 179 9e-40 seq725 167 5e-36 seq3278 89.7 1e-12 >seq1378 Length=1736952 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || ||||| || || |||||||| ||||| | | ||| | ||||||| Sbjct 707725 AGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCT 707666 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || |||||||| || | || ||||||||| Sbjct 707665 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCC 707606 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | || |||||||||||||| ||| Sbjct 707605 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATAGTC 707546 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 707545 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 707514 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 708181 AGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 708122 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| || | || ||||||||| Sbjct 708121 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCC 708062 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | ||| ||||| |||||||| ||| Sbjct 708061 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCAAGAGTGATGGTC 708002 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 708001 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 707970 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967 || ||| || ||||| || || |||||||| || || | ||||| | || |||||||| Sbjct 707490 AATGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAG 707431 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 ||||||||| || ||||| || | || || || ||||||| ||||||||||||||||| Sbjct 707430 CTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGAT 707371 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| |||||||| |||||||||||| | || |||||||||||||| ||||| || Sbjct 707370 CTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCC 707311 Query 211088 CGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| | |||||| || Sbjct 707310 AGTCAGGGTCTTCACAAAGATCTGCATCTT 707281 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 707953 AGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 707894 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| || | || ||||||||| Sbjct 707893 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCC 707834 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | ||| ||||| || ||||| ||| Sbjct 707833 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCAAGGGTGATGGTC 707774 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 707773 TTGCCTGTCAGGGTCTTCACAAAGATTTGCAT 707742 >seq725 Length=5509020 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || | |||||| || || |||||||| || || | |||||| | |||||| Sbjct 5362072 AGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCT 5362013 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || || || || |||| |||||||| ||| Sbjct 5362012 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCC 5361953 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | ||||| || || ||||| ||| Sbjct 5361952 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTC 5361893 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | ||||||||| Sbjct 5361892 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 5361858 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || | |||||| || || |||||||| || || | ||||| | |||||| Sbjct 5362300 AGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 5362241 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | ||||| || || |||| |||||||| ||| Sbjct 5362240 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCTTCCTTATCC 5362181 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | ||||| || || ||||| ||| Sbjct 5362180 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 5362121 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 5362120 TTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362089 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || |||||||| || || |||||||| || || | ||||| | |||||| Sbjct 5362528 AGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 5362469 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || |||| |||||||| ||| Sbjct 5362468 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCC 5362409 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | ||| || || || ||||| ||| Sbjct 5362408 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATGGTC 5362349 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 5362348 TTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 5362317 >seq3278 Length=1645786 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| ||||||||||| || || || || | |||||| |||||||||||||| ||||||| Sbjct 1494498 CTTTCTGGATGTTATAGTCTGCCAGTGTGCGTCCATCCTCCAGCTGCTTGCCCGCGAAGA 1494557 Query 210985 TAAGGCGTTGTTGGTCAGGAGG 211006 | ||||| || |||||||| || Sbjct 1494558 TCAGGCGCTGCTGGTCAGGGGG 1494579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158930265089450