Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq725 102 6e-17 seq1378 98.7 7e-16 >seq725 Length=5509020 Score = 102 bits (112), Expect = 6e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || |||||||| || || || ||||| || |||||||| || Sbjct 5361858 AAAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAAGTTGAGCCC 5361917 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || || || ||||| | || ||||| Sbjct 5361918 AGTGACACCATCGAGAATGTCAAGGC-CAAGATCCAGGATAAGGAAGGCATTCCCCCAGA 5361976 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || ||||| ||||| || |||||||| | ||||| | || || Sbjct 5361977 TCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCTGACTA 5362036 Query 23787 CAACATACAAAAAGAGTCCACATTACAT 23814 |||||| || || || ||||| || ||| Sbjct 5362037 CAACATCCAGAAGGAATCCACTTTGCAT 5362064 >seq1378 Length=1736952 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||||||||| || || ||| Sbjct 707514 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTCGAGGTGGAGCCCAGT 707573 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 707574 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGGATCCCCCCTGACCA 707632 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||||||||| || |||||||| | |||||| || |||||||| Sbjct 707633 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCTTGTCTGATTACAA 707692 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 707693 CATCCAGAAGGAATCCAC 707710 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || || || ||||||||||| || || || Sbjct 707281 AAGATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTGGAGCCC 707340 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| ||||| | || || ||| Sbjct 707341 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 707400 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || |||||||||| ||||| | || ||| Sbjct 707401 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 707460 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || || ||||| Sbjct 707461 AACATCCAGAAGGAATCCAC 707480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337948095984440