Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1378 163 7e-35 seq725 132 1e-25 >seq1378 Length=1736952 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||||||||||||||| |||||||| || |||| ||||| |||| || || Sbjct 708191 ACGCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 708132 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||| ||||||||||| || ||||| || | || ||||| || || || || Sbjct 708131 GCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCC 708072 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| ||||||||||| || |||||| || | Sbjct 708071 CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGTTCCACCTCAAG 708012 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 708011 AGTGATGGTCTTGCCAGTCA 707992 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||||||||||||||| |||||||| || |||| ||||| |||| || || Sbjct 707963 ACGCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 707904 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||| ||||||||||| || ||||| || | || ||||| || || || || Sbjct 707903 GCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATCCC 707844 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| || |||||||| || |||||| || | Sbjct 707843 CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCAAG 707784 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| || || | || | |||||| Sbjct 707783 GGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATTTGCAT 707742 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||||||||||||||| |||||||| || |||| |||||||| | ||| || Sbjct 707735 ACGCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGT 707676 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || || ||||| | | || ||||| || || || || Sbjct 707675 GCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCC 707616 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| ||||||||||| || ||||| || | Sbjct 707615 CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCGAG 707556 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 707555 AGTGATAGTCTTGCCAGTCA 707536 Score = 132 bits (146), Expect = 1e-25 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 ||||| || |||||| |||||||| || |||| ||||| || | || || | ||| Sbjct 707498 CTCAGAGAAATGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 707439 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||| |||||||| || || ||||| || | || || ||||| ||||| ||||||||| Sbjct 707438 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 707379 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||| |||||| ||||||||||| || ||||| || | ||||| Sbjct 707378 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATG 707319 Query 225679 GTCTTGCCCGTCA 225691 |||||||| |||| Sbjct 707318 GTCTTGCCAGTCA 707306 >seq725 Length=5509020 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || ||||||||||| || |||| ||||| || | | || | |||||| Sbjct 5362529 CAGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATC 5362470 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| |||||||| || Sbjct 5362469 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATC 5362410 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || ||| || || | ||||| || Sbjct 5362409 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTGATGGT 5362350 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| ||||| || || Sbjct 5362349 CTTGCCTGTCAAGGTCTT 5362332 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || | ||||||||| || |||| ||||| || | | || | |||||| Sbjct 5362073 CAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATC 5362014 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || || || ||||| |||||||| || Sbjct 5362013 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATC 5361954 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 5361953 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGT 5361894 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| || | || || | ||| | |||||||| Sbjct 5361893 CTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 5361858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192303079961420