Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2593 114 1e-20 seq1723 87.8 1e-12 >seq2593 Length=513555 Score = 114 bits (126), Expect = 1e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 |||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 6890 TAGCCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 6949 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| || || |||||||||||||| ||||| || | || || | Sbjct 6950 CACTCCTAGTCCCATATCTCCAGACCTCTGGTAGAGTTGGCAAGACAATTCACCATTTAG 7009 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || || || || | |||||||||||||| | ||||| ||| Sbjct 7010 GACATAGAATTGGCAAAGAGCATGGCACGGAGGCAAAGCCATCAGA 7055 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 ||||||||||||||||| || || || ||||||| || ||||| || || ||||| ||| Sbjct 10290 AAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 10348 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || ||||| | Sbjct 10349 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTTGC 10408 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||| ||||||| ||||| || || Sbjct 10409 AGAGAGTTCTTTGGCATTTGTAGAACC 10435 >seq1723 Length=1009378 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||| |||||||| |||| || | |||||| ||| ||| | |||||| || || Sbjct 127571 TTGAGCTGTCTGCTGAGCACTATATTAATTCTGTCTTTCAAAGGACGATTCTTCTCAGGA 127630 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 127631 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 127678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406089294797980