Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2593 113 3e-20 >seq2593 Length=513555 Score = 113 bits (124), Expect = 3e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| |||| |||||||| ||||||||||| ||||| || || || ||||||| || Sbjct 10268 CATGTCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 10327 Query 27549 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 10328 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 10386 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||| ||||| || ||||| | ||||| ||||||| ||||| || || Sbjct 10387 CCCAAATCTTCACACCCTTTGCAGAGAGTTCTTTGGCATTTGTAGAACC 10435 Score = 109 bits (120), Expect = 4e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 |||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 6890 TAGCCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 6949 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || ||||| || || |||||||||||||| || || || | || |||| Sbjct 6950 CACTCCTAGTCCCATATCTCCAGACCTCTGGTAGAGTTGGCAAGACAATTCACCATTTAG 7009 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || || || || | || ||||||||||| | |||||| || Sbjct 7010 GACATAGAATTGGCAAAGAGCATGGCACGGAGGCAAAGCCATCAG 7054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369439964700830