Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq2752 161 1e-34 seq14921 98.7 1e-15 >seq2752 Length=1424994 Score = 161 bits (178), Expect = 1e-34 Identities = 214/297 (72%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || |||||||| || |||||| | |||| || ||| | | || Sbjct 1096263 GGAAAGCAGTGAAAGGACACCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCTG 1096204 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || |||| ||||| | ||| || ||||||||||||||||||||| | |||| Sbjct 1096203 TATTGATTATTTCGAAGCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 1096144 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || || || || |||||||| || || | ||| | || Sbjct 1096143 AGCAGATCGCATTTCCCATCAGTCCCTTCAGAGAGAACGGTGCTCCGATCTCCACCATTG 1096084 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | ||||| |||||||| || || |||||||| |||| || || | |||||||||| Sbjct 1096083 TTTCACCAAAGATGGCACCTGGGCGTGGCTTTTCTACCAGGAGGCCTGGATACAGCTCCA 1096024 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||| || | |||||| ||||| | ||||| || || || || |||||||||| Sbjct 1096023 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCCGCTGCCATTTCTTTTTCTCCTG 1095967 Score = 159 bits (176), Expect = 5e-34 Identities = 180/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | ||| |||||||| || ||||| || ||| || ||||| || |||||||| Sbjct 1094199 ATGAGCCTAGTAGTCTGGAAGAGCTGCTCATCGTCCCACTCGGGATGCTCCTGTTTCAGG 1094140 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | ||||| |||| |||||||||||| ||||| || || ||||||||||| | || || Sbjct 1094139 ATGTCGCAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAATCCTGGG 1094080 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || ||||||| | ||| || ||| || || | ||||| Sbjct 1094079 ACCAAACCAAACACCTCCTGCCCGACAGAGAACTGCAGGTGTTCAGGTACGTGAGGAGGG 1094020 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | |||| ||| || || | || ||||||||||| || || |||||| Sbjct 1094019 TAGATCATCTCCGCCTGAGTGTCCTTCACTGTTGGCGGATACATTTCTCCATCGATCATC 1093960 Query 9484 T 9484 | Sbjct 1093959 T 1093959 >seq14921 Length=9872375 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||| || | | || ||| ||| |||||| || || || || Sbjct 7898157 CATCTGGCACACGGAATGCCACGTATGGGCACTTCTTCACGTTGAGGCACACAAGTTTCT 7898098 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| |||| || ||| | || || |||||||| || || ||||| |||| Sbjct 7898097 TGAGTGATGCTGTCTTAACTATCTCAAAGCCAGTTTCTCCGCCAAAAGTACTGGGTTTCC 7898038 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| ||| | | || || || ||||| ||||||| || | Sbjct 7898037 AGTACTCTGGGGAGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAACGGAGATCCGA 7897978 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| ||||| || || | | ||| |||| || || | || || || | Sbjct 7897977 TCTCCACCATGCTTTCACCAAACATACCATCGGGTTGGGGTTTCTCAAGCAGCAAGCCTG 7897918 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || | ||||| ||| || | |||||| || || Sbjct 7897917 GATAAAACTCCAGAGCATCAATGTCTCCATACAG 7897884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716743012867200