Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1378 140 8e-28 seq725 138 3e-27 >seq1378 Length=1736952 Score = 140 bits (154), Expect = 8e-28 Identities = 159/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || ||||| |||||||||| ||| || | Sbjct 707517 CAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTCGAGGTGG--AGCCCAGTG 707574 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 707575 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAGC 707634 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | | ||||| ||||| || ||||| ||||||||| | || |||| | ||||| ||| Sbjct 707635 AGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCAC-CTTGTCTGATTACAAC 707693 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || || ||||| Sbjct 707694 ATCCAGAAGGAATCCACCCTCCACCTTGT 707722 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || ||||||||| | ||| Sbjct 707973 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCCAGTGAC 708032 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || || ||||| || |||||||| Sbjct 708033 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCTGACCAGCAG 708092 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 708093 AGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATC 708152 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || ||||| Sbjct 708153 CAGAAGGAATCCACCCTCCACCTTGT 708178 Score = 129 bits (142), Expect = 1e-24 Identities = 151/202 (75%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || ||||| |||||||||| ||| || | Sbjct 707287 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTGG--AGCCCAGTG 707344 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| |||||||| ||||| || ||||| || |||| Sbjct 707345 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGC 707404 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| ||||| || | || || | || || ||| Sbjct 707405 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 707464 Query 178102 TCCAAAAAGAATCAACACTGCA 178123 |||| || ||||| || || || Sbjct 707465 TCCAGAAGGAATCCACCCTCCA 707486 >seq725 Length=5509020 Score = 138 bits (152), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || ||||| || || || |||||||| || || || Sbjct 5361858 AAAATGC---AGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAAGTTGA- 5361913 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||||||||| ||||| ||||| ||||| || ||||| || || | Sbjct 5361914 -GCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCC 5361972 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || ||||| || || || ||||| |||||||| | || ||| | | Sbjct 5361973 CAGATCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCTG 5362032 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || ||| |||| || ||||| || |||||||||| || | || ||| Sbjct 5362033 ACTACAACATCCAGAAGGAATCCACTTTGCATCTTGTGCTGCGCCTGAGA 5362082 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | ||||| || || |||||||| || || ||| | ||| Sbjct 5362320 CAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAAGTCGAACCCAGTGAC 5362379 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| ||||| || ||||| || || || || ||||| Sbjct 5362380 ACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAGCAG 5362439 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| | || || | || || ||| || Sbjct 5362440 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAACATC 5362499 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || ||||||||||| Sbjct 5362500 CAGAAGGAATCCACTCTGCATCTTGT 5362525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203500937506420