Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1378 125 7e-24 seq725 120 3e-22 >seq1378 Length=1736952 Score = 125 bits (138), Expect = 7e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| ||||| || ||||||||| |||| || |||||||||||||| || Sbjct 707474 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAG 707415 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| | ||| || || | |||| || ||||||||| ||| || ||||| | Sbjct 707414 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 707355 Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | ||||| || | ||||||||| | || || || || || ||||| ||||| || Sbjct 707354 TCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 707295 Query 41852 AAAATCTGCATGTT 41865 || |||||||| || Sbjct 707294 AAGATCTGCATCTT 707281 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || || || ||| |||||||| ||||| || || || Sbjct 707741 GCCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 707682 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || |||||||||||||| || |||| | ||| ||||| | ||| Sbjct 707681 CAAGGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 707622 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||||| | | ||||| || | |||||| Sbjct 707621 GATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCAC 707562 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGT 41864 ||| | || || || || || ||||| ||||| || || |||||||||| Sbjct 707561 CTCGAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGT 707512 >seq725 Length=5509020 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| ||||||| ||| |||||||| ||||| ||||| |||||||||||| Sbjct 5362306 AGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 5362247 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | |||||| || | ||||| || ||| Sbjct 5362246 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCTTCC 5362187 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | ||||| || | ||| || |||| || Sbjct 5362186 TTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTG 5362127 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| || || ||||||||| Sbjct 5362126 ATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATG 5362088 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| ||| |||||||| ||||| ||||| |||||||||||| Sbjct 5362534 AGGCGCAGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 5362475 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 5362474 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 5362415 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | ||||| || | || || |||| || Sbjct 5362414 TTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGGGTG 5362355 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| || || ||||||||| Sbjct 5362354 ATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATG 5362316 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| ||||||| ||| |||||||| ||||| ||||| || ||||||||| Sbjct 5362078 AGGCGCAGCACAAGATGCAAAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGC 5362019 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 5362018 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 5361959 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | ||||| || | ||| || || | || Sbjct 5361958 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACTTCAAGGGTG 5361899 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 || || || || || || ||||| ||||| |||||||| || || Sbjct 5361898 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTTCTC 5361855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462217722516000