Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1972 89.7 1e-12 seq1971 89.7 1e-12 >seq1972 Length=148041 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 102704 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 102645 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 102644 CCCACGTTGGGC 102633 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 114817 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 114876 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 114877 CCCACGTTGGGC 114888 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 117487 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 117546 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 117547 CCCACGTTGGGC 117558 >seq1971 Length=13716160 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 10363642 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 10363583 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10363582 CCCACGTTGGGC 10363571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057664192214330