Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1508 134 2e-26 seq7347 120 4e-22 seq5541 104 3e-17 >seq1508 Length=8482504 Score = 134 bits (148), Expect = 2e-26 Identities = 185/257 (72%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||||||||||| | |||||||||||| Sbjct 5257815 GGGCACGCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 5257874 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG--TCGTCGCTA 83236 || || |||||| ||| ||| |||| | ||| |||| || | | |||||| Sbjct 5257875 GACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCG--CTGAGGGGTCGTCGTGC 5257932 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || ||||| |||||| ||||||| |||||| || || || | || || ||| Sbjct 5257933 GGGAAGGGCAGCGCCTCTTTCAGGAAGGTGAAGAGGGGGTGCGCATTCTTCCCATTCACC 5257992 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||| | || || || |||| | | ||| ||||| |||||||||| | Sbjct 5257993 TCGCACTTCTCGAACATGATGAAATTGGGCTTGTACCCGCCGCCAGGCCGGACGTGCTCC 5258052 Query 83357 AGGGAAGGCAAGATCTC 83373 || || ||| |||||| Sbjct 5258053 AGCGAGAGCAGGATCTC 5258069 >seq7347 Length=332 Score = 120 bits (132), Expect = 4e-22 Identities = 125/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 83382 GGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAG 83441 |||| || |||||| || || ||||| || ||||| || ||||| ||||||| ||| | Sbjct 329 GGGCACTTACCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGG 270 Query 83442 CTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGA 83501 ||| | | ||||||| ||| | ||| ||||| ||||| |||||| | ||||||| Sbjct 269 GG--TAGCGGGCT-TGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGA 213 Query 83502 GGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 ||||||| |||||||||||||| | || |||||||| |||| Sbjct 212 GGGACGCCACGTTCTCGATGAGGACCACGCGGCCCCGGAAGA 171 >seq5541 Length=252 Score = 104 bits (114), Expect = 3e-17 Identities = 178/248 (72%), Gaps = 13/248 (5%) Strand=Plus/Minus Query 83094 GGCA-GCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCG 83152 |||| |||| ||||||| | || | || || |||| |||||||| |||||||||| Sbjct 242 GGCATGCGGGGGCTGTAGCGCCGGAAAGGTTCCCCCTCAGGACCCACCAGGAACTTCTCG 183 Query 83153 AAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTC 83212 |||||||||| | |||| || | ||| || ||||| | || |||| ||| || Sbjct 182 AAGTTCCAGGAGATGTCGGAACGCCGCACCGGGCTCCAGGTGACGAAGCGGGGCTCGGTC 123 Query 83213 A-CGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAA 83268 | | | |||| | |||||| ||||| || ||| |||| || ||| ||||||| Sbjct 122 ATCAGGTGTGC-CGCCTCGTCGGCCGGCGCGGGGAGGTGAGCCT-TC--AGGTAGGCGAA 67 Query 83269 GAGCGGAT--GTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGC 83326 || || | ||| || ||| ||||| |||| |||||||| |||||| | ||||| ||| Sbjct 66 GACGGGGTGGGTGTCC-TGC-CCGTTCACCTGGCACTTCTGGAAGAGGGTGAAGTTGGGC 9 Query 83327 TCGAAGCC 83334 |||||||| Sbjct 8 TCGAAGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608707070961640