Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq673 123 2e-23 seq2186 120 3e-22 >seq673 Length=3179169 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | | ||||||||| |||||||| ||||| | ||||| | |||| Sbjct 2477397 AGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCT 2477456 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | | || ||||||||||| ||| | ||||||||||| Sbjct 2477457 TCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 2477516 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | |||||||||| Sbjct 2477517 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTC 2477576 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 ||||| || | || || ||||| || ||||| ||||| Sbjct 2477577 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAA 2477614 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | | ||||||||| |||||||| ||||| | ||||| | |||| Sbjct 2476485 AGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCT 2476544 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | | || ||||||||||| ||| | ||||||||||| Sbjct 2476545 TCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 2476604 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | |||||||||| Sbjct 2476605 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTC 2476664 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || | ||||| || ||||| Sbjct 2476665 TTGCCAGTCAGAGTCGTCACAAAGATCTGCAT 2476696 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | | ||||||||| |||||||| ||||| | ||||| | |||| Sbjct 2476713 AGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCT 2476772 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | | || ||||||||||| ||| | ||||||||||| Sbjct 2476773 TCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 2476832 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | |||||||||| Sbjct 2476833 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTC 2476892 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || | ||||| || ||||| Sbjct 2476893 TTGCCAGTCAGAGTCGTCACAAAGATCTGCAT 2476924 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | | ||||||||| |||||||| ||||| | ||||| | |||| Sbjct 2476941 AGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCT 2477000 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | | || ||||||||||| ||| | ||||||||||| Sbjct 2477001 TCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 2477060 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | |||||||||| Sbjct 2477061 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTC 2477120 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || | ||||| || ||||| Sbjct 2477121 TTGCCAGTCAGAGTCGTCACAAAGATCTGCAT 2477152 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | | ||||||||| |||||||| ||||| | ||||| | |||| Sbjct 2477169 AGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCT 2477228 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | | || ||||||||||| ||| | ||||||||||| Sbjct 2477229 TCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 2477288 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | |||||||||| Sbjct 2477289 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTC 2477348 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || | ||||| || ||||| Sbjct 2477349 TTGCCAGTCAGAGTCGTCACAAAGATCTGCAT 2477380 >seq2186 Length=3828881 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || | ||| | || |||| |||| ||||| ||||| || ||||| ||||| Sbjct 2467681 GTTACCACCCCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 2467740 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| | | || |||||||| ||||| ||| | || || |||||||| ||| Sbjct 2467741 AGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGG 2467800 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | |||||||||||| |||||| || || | | | || |||| |||||| Sbjct 2467801 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 2467860 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| ||| ||||||||||| || | || || || || || |||||||| Sbjct 2467861 AACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTTT 2467914 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||| ||||| || ||||| ||||| | |||||| | | || Sbjct 2468070 AGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2468129 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||| | ||||| ||| | || || |||||||| || ||| | ||| |||||||| Sbjct 2468130 TCCAGCGGCTTGCCAGCAAAGATCAGCCTCTGCTGCTCTGGGGGAATGCCCTCCTTGTCC 2468189 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || |||| |||||| |||| ||| |||||| Sbjct 2468190 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2468249 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || | || || || || || |||||||| Sbjct 2468250 TTGCCCGTCAGGGTCTTCACGAAGATCTGCATTTT 2468284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422198520165356