Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2186 152 5e-32 seq673 120 3e-22 seq1389 87.8 2e-12 >seq2186 Length=3828881 Score = 152 bits (168), Expect = 5e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || || |||||||| ||||||||| | || || || Sbjct 2467916 GAAAAATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGC 2467857 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| |||| | | | | |||||| || || | ||||| || ||||| ||| ||| Sbjct 2467856 CCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGG 2467797 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| | || |||| || ||||| |||||||| || | ||||||||| |||| Sbjct 2467796 ATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACT 2467737 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| ||||| | || ||||| ||||||| || Sbjct 2467736 ACAACATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGCCTGAGGGGTGG 2467685 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || || |||||||| ||||||||| | || || || Sbjct 2468286 GAAAAATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGC 2468227 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| |||| | | | | |||||| || || | ||||| |||||||| ||| | | Sbjct 2468226 CCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAG 2468167 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| | || |||| || ||||| | |||||| || | ||||||||| |||| Sbjct 2468166 AGCAGCAGAGGCTGATCTTTGCTGGCAAGCCGCTGGAAGATGGGCGCACCCTGTCTGACT 2468107 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| ||||| | || ||||| ||||||| ||| Sbjct 2468106 ACAACATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGCCTGAGGGGTGGC 2468054 >seq673 Length=3179169 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||| ||| | || || || || Sbjct 2477611 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCC 2477552 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | | | | |||| || || | ||||| || || || ||| | ||| Sbjct 2477551 CGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGAC 2477492 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || ||| || ||||| |||||||| |||| |||| |||| |||||| Sbjct 2477491 CAGCAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTAC 2477432 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| ||||||||| || | || ||||| ||| ||||| ||||||| ||| Sbjct 2477431 AACATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2477381 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || | || || || ||||| ||||| ||| | || || || || Sbjct 2476696 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2476637 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || || ||| | |||||| Sbjct 2476636 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2476577 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || ||| || ||||| |||||||| |||| |||| |||| ||||||||| Sbjct 2476576 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476517 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| || | || ||||| ||| ||||| ||||||| ||| Sbjct 2476516 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2476469 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || | || || || ||||| ||||| ||| | || || || || Sbjct 2476924 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2476865 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || || ||| | |||||| Sbjct 2476864 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2476805 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || ||| || ||||| |||||||| |||| |||| |||| ||||||||| Sbjct 2476804 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476745 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| || | || ||||| ||| ||||| ||||||| ||| Sbjct 2476744 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2476697 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || | || || || ||||| ||||| ||| | || || || || Sbjct 2477152 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477093 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || || ||| | |||||| Sbjct 2477092 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477033 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || ||| || ||||| |||||||| |||| |||| |||| ||||||||| Sbjct 2477032 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476973 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| || | || ||||| ||| ||||| ||||||| ||| Sbjct 2476972 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2476925 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || | || || || ||||| ||||| ||| | || || || || Sbjct 2477380 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477321 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || || ||| | |||||| Sbjct 2477320 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477261 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || ||| || ||||| |||||||| |||| |||| |||| ||||||||| Sbjct 2477260 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2477201 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| || | || ||||| ||| ||||| ||||||| ||| Sbjct 2477200 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2477153 >seq1389 Length=9232658 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 5781058 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 5780999 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 5780998 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 5780939 Query 117162 ACGAGG 117167 | |||| Sbjct 5780938 ATGAGG 5780933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | | || |||||||||||||| || |||||||| || ||||| ||| Sbjct 5787566 GAGCCTCTCCTCAGAAAAAATCCCCGCCGGTTCGTCATCTTCCCCATTCAGTACCCAGAC 5787507 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| ||||||||| |||| |||| || || ||||| | || |||||| Sbjct 5787506 ATATGGAAAATGTACAAACAGGCTCAGGCCTCCTTTTGGACAGCAGAAGAGGTG 5787453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515143263130160