Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1469 102 9e-17 seq168 86.0 7e-12 seq2459 82.4 9e-11 >seq1469 Length=1915686 Score = 102 bits (112), Expect = 9e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 886517 TTCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 886576 Query 60123 CTATACTACCGAGGATTGA 60141 |||||||| |||||| ||| Sbjct 886577 CTATACTAACGAGGAATGA 886595 >seq168 Length=1547359 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 42990 CTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCG 43049 ||| | |||||||||||||| |||| ||| || || | || ||||||||||||||||| Sbjct 795309 CTCACTTTTTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCTAGCTGCTTACCAGCA 795368 Query 43050 AATATGAGTCGCTGCTGGTC 43069 || || |||||||||||||| Sbjct 795369 AAAATCAGTCGCTGCTGGTC 795388 >seq2459 Length=1257301 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||||| |||||| | |||||||| || ||||||||||||| Sbjct 1097473 CTCCCCGTCAGGGAATCGAACCCCGGTCTCTTGTGTGACAGGTGGGGATACTCACCACTA 1097414 Query 60126 TACTACCGAGGAT 60138 ||||| | ||||| Sbjct 1097413 TACTAACAAGGAT 1097401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571733321233480