Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2186 98.7 6e-16 seq673 87.8 1e-12 >seq2186 Length=3828881 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||| ||| | || ||| ||||| ||||||||||| ||| Sbjct 2467685 CCACCCCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 2467744 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| || || || |||| |||||| || ||| Sbjct 2467745 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGA 2467804 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | || | | || || Sbjct 2467805 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 2467864 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 2467865 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2467911 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||| ||| | || ||| ||||| ||||||||||| ||| Sbjct 2468055 CCACCCCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 2468114 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| | ||||||| || || || |||| |||||| || ||| Sbjct 2468115 AGGGTGCGCCCATCTTCCAGCGGCTTGCCAGCAAAGATCAGCCTCTGCTGCTCTGGGGGA 2468174 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | || | | || || Sbjct 2468175 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 2468234 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 2468235 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2468281 >seq673 Length=3179169 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| | || |||| |||| ||||||||| || || Sbjct 2476506 TCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAG 2476565 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 | |||| ||||||||| ||| | | |||||||| ||||| ||| | || Sbjct 2476566 ACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 2476625 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || | || ||||| ||||| || ||||| ||||| Sbjct 2476626 TCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCACA 2476685 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 2476686 AAGATCTGCAT 2476696 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| | || |||| |||| ||||||||| || || Sbjct 2476734 TCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAG 2476793 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 | |||| ||||||||| ||| | | |||||||| ||||| ||| | || Sbjct 2476794 ACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 2476853 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || | || ||||| ||||| || ||||| ||||| Sbjct 2476854 TCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCACA 2476913 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 2476914 AAGATCTGCAT 2476924 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| | || |||| |||| ||||||||| || || Sbjct 2476962 TCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAG 2477021 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 | |||| ||||||||| ||| | | |||||||| ||||| ||| | || Sbjct 2477022 ACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 2477081 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || | || ||||| ||||| || ||||| ||||| Sbjct 2477082 TCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCACA 2477141 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 2477142 AAGATCTGCAT 2477152 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| | || |||| |||| ||||||||| || || Sbjct 2477190 TCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAG 2477249 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 | |||| ||||||||| ||| | | |||||||| ||||| ||| | || Sbjct 2477250 ACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 2477309 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || | || ||||| ||||| || ||||| ||||| Sbjct 2477310 TCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCACA 2477369 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 2477370 AAGATCTGCAT 2477380 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| | || |||| |||| ||||||||| || || Sbjct 2477418 TCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAG 2477477 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 | |||| ||||||||| ||| | | |||||||| ||||| ||| | || Sbjct 2477478 ACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 2477537 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || | || ||||| ||||| || || || |||||| Sbjct 2477538 TCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACA 2477597 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 2477598 AAGATCTGCAT 2477608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323025573644960