Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2224 363 1e-95 seq901 104 2e-17 >seq2224 Length=14638873 Score = 363 bits (402), Expect = 1e-95 Identities = 651/938 (69%), Gaps = 12/938 (1%) Strand=Plus/Minus Query 107628 TACCTCAACATAACCAGAGACTGTGAGC-GCTTCAAGGCCCAAAGGAAGTTCATACAGTT 107686 ||||| ||||| || | |||| ||| ||||||||| || |||||| |||| Sbjct 6015769 TACCTGAACATGACGAAGAACTGC-AGCAGCTTCAAGGAGAGCCGGCGGTTCATCGAGTT 6015711 Query 107687 CCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 ||| ||||| | || ||| || |||||||| |||||||| ||||| |||| | || Sbjct 6015710 CCCGCTGAGCCAGGAGGAGGCGGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAA 6015651 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 || || | || || ||||| ||||| || | || ||||| |||||| | ||||| || Sbjct 6015650 AATCGAGATGTTCGAGCGGCTCCTGCGGTCCCTCTACGCCCCCCAGAACGTCTACTGCGT 6015591 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 |||| | || | |||||||| | | ||| | ||||| || |||||| |||| Sbjct 6015590 CCACATTGACGGCAAGTCCCCGGCTGCCTTCCAGGAGGCCGTGCGGGCCATCGCAGCCTG 6015531 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||||||||||||||| |||| || ||| |||||| ||||||||||||||| | Sbjct 6015530 CTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCG 6015471 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTA 107986 |||| || ||||||||||| ||| | ||| || | |||||| | ||||| ||| || Sbjct 6015470 GCTGCAGGCCGACCTGAACTGCATGCAGGACCTGTTGCAGAGCCCTGTGCCGTGGCGCTA 6015411 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 | | || || || ||||| || || |||||||| |||||||| |||||||| |||| || Sbjct 6015410 CATCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCCGAGATCGTCCGTGC 6015351 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106 ||| ||| || || |||| |||||| |||||||| ||| || || | || Sbjct 6015350 CCTGAAGGTGCTGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCCTGAAGCG 6015291 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGT--GACAGACACACTGTACCCTACCAGCA-AGAT 108163 | |||||| | |||| | |||| || | ||| || | | || ||| || ||| Sbjct 6015290 GGAGCGCTGGCAGTACCACCATGAAGTGGGGCAG-TTCA-TCTCCCGGACCGCCACAGA- 6015234 Query 108164 GAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 ||| | || || || | || | ||||||||||| || || || || | |||| | | Sbjct 6015233 GAAACAGCCGCCACCCCACAACTCTCCCATGTTCACGGGCAACGCGTACATCGTGGTCAC 6015174 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGT 108283 || ||||| || || || |||| || ||||| | || | | || |||| Sbjct 6015173 GCGGGCCTTCGTGCAGCACATCTTTGAGAACCCCACGGTGCAGCAGTTCCTCGAGTGGGC 6015114 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGG 108341 ||| |||||||| ||||| ||||| ||| ||||||||||||| | || ||| ||| | Sbjct 6015113 CAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACCCTCAACCGCATGC-CCG-GC 6015056 Query 108342 ATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401 |||| || | | || | ||||| || |||| || |||| ||| | || Sbjct 6015055 GTGCCAGGTGCCATGCCCCAGAATGACAAGTTCCAGCTCTCCGATATGAACGCCCTGCCC 6014996 Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 | || ||||||||| |||||| ||||| || ||||| ||| ||||| || | ||| Sbjct 6014995 CGCCTGGTCAAGTGGGAGTACCTGGAGGGCGACACCAGCAGGGGCGCGCCCTACCCGCCC 6014936 Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 ||| | || || | | | ||| || ||| ||||||| || ||| || |||||| Sbjct 6014935 TGCACCGGCCAGCACCAGCGCGCCGGCTCCATCTACGGGGTGGGCGACGTGCCCTGGATG 6014876 Query 108522 CTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 |||||| | || ||||||||||| |||||||| ||||| Sbjct 6014875 CTCCAGCAGCACCACCTCTTGGCCAACAAGTTCGACCC 6014838 >seq901 Length=1018657 Score = 104 bits (114), Expect = 2e-17 Identities = 198/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 919690 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA 919749 Query 108334 CTCCGTGGATGCCTGGCT-CTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | || || | | ||| || || || ||||| | | || |||||| Sbjct 919750 -TCCCTGAAGTCCCGGGTGCAGTTTCTTCTAGTAAC---AAGTACGATGTTTCTGACATG 919805 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || || || || || || Sbjct 919806 AATGCGCTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAAGGTGCA 919865 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 ||||| |||| ||| |||| | ||| | | |||| ||| ||||| || ||| Sbjct 919866 CCTTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTTTTTGGGGCAGGAGAC 919925 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 919926 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 919973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348218752793934