Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq673 136 3e-27 seq2186 120 2e-22 >seq673 Length=3179169 Score = 136 bits (150), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| ||| |||| |||| ||||| || || ||||| || Sbjct 2477417 CTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 2477476 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 | || || ||| ||||| || || | ||| ||||||||| || || ||| || Sbjct 2477477 GACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2477536 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | |||||| |||||||| ||||| |||||||| Sbjct 2477537 CTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCAC 2477596 Query 45325 AAAGATTTGCATGTTG--CCTCAATACACACAGA 45356 |||||| ||||||||| | ||| ||| ||||| Sbjct 2477597 AAAGATCTGCATGTTGAACTGCAAAACATACAGA 2477630 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| ||| |||| |||| ||||| || || ||||| || Sbjct 2476505 CTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 2476564 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 | || || ||| ||||| || || | ||| ||||||||| || || ||| || Sbjct 2476565 GACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2476624 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | |||||| |||||||| ||||||||| |||| Sbjct 2476625 CTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCAC 2476684 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 2476685 AAAGATCTGCATG 2476697 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| ||| |||| |||| ||||| || || ||||| || Sbjct 2476733 CTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 2476792 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 | || || ||| ||||| || || | ||| ||||||||| || || ||| || Sbjct 2476793 GACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2476852 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | |||||| |||||||| ||||||||| |||| Sbjct 2476853 CTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCAC 2476912 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 2476913 AAAGATCTGCATG 2476925 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| ||| |||| |||| ||||| || || ||||| || Sbjct 2476961 CTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 2477020 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 | || || ||| ||||| || || | ||| ||||||||| || || ||| || Sbjct 2477021 GACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2477080 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | |||||| |||||||| ||||||||| |||| Sbjct 2477081 CTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCAC 2477140 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 2477141 AAAGATCTGCATG 2477153 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| ||| |||| |||| ||||| || || ||||| || Sbjct 2477189 CTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 2477248 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 | || || ||| ||||| || || | ||| ||||||||| || || ||| || Sbjct 2477249 GACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2477308 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||| ||||| | |||||| |||||||| ||||||||| |||| Sbjct 2477309 CTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCAC 2477368 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 2477369 AAAGATCTGCATG 2477381 >seq2186 Length=3828881 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | ||||||||||| ||| |||||||| ||||||||||| Sbjct 2468054 GCCACCCCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 2468113 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| | || || || || |||| || ||| || || || || Sbjct 2468114 CAGGGTGCGCCCATCTTCCAGCGGCTTGCCAGCAAAGATCAGCCTCTGCTGCTCTGGGGG 2468173 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | | |||| | ||| || Sbjct 2468174 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 2468233 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| ||| || |||||||||||||| |||||||| ||||| ||||| || Sbjct 2468234 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTTT 2468284 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | ||||||||||| ||| |||||||| ||||||||||| | Sbjct 2467685 CCACCCCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 2467744 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || |||| || ||| || || || || Sbjct 2467745 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGA 2467804 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | | |||| | ||| ||| Sbjct 2467805 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 2467864 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| ||| || |||||||||||||| |||||||| ||||| ||||| || Sbjct 2467865 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTTT 2467914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395018426582611