Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1587 120 3e-22 seq1389 105 6e-18 >seq1587 Length=5570568 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||||| || |||||||| ||||| || | ||| ||||| ||||||| ||| | Sbjct 1717226 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1717167 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | |||||| |||| || || || || |||||||| || || || ||||| ||||| | Sbjct 1717166 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCTGCAAAAG 1717107 Query 14346 CTATTAATCGTTCTCC 14361 ||| || |||||||| Sbjct 1717106 CTACTACACGTTCTCC 1717091 Score = 89.7 bits (98), Expect = 5e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 14457 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||||| | | |||||| || |||||||| | || |||||||| || ||||| | Sbjct 1715192 TCTCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCCGAATGTATAT 1715133 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||||| ||||| || ||||| ||||| | ||| |||| Sbjct 1715132 TTTCCATAGCAATCTGGAAGCCATAGAAACAACGAGCCTCTG 1715091 >seq1389 Length=9232658 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || || || || | ||| ||||||| || | || | Sbjct 5780933 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 5780992 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||||||||| ||||| || || || |||||||| || || |||||||||||||| | Sbjct 5780993 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 5781052 Query 14346 C 14346 | Sbjct 5781053 C 5781053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482274508287880