Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq737 116 3e-21 seq2186 100 3e-16 >seq737 Length=313774 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| || ||||||| ||||| || ||||| || || |||| || || | ||| | Sbjct 290594 TTTCAACTCGCTTCATAAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTC 290653 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||| ||||| || |||||||| || || || | ||| || || | |||| ||||| Sbjct 290654 GCTGCTCTTCTTTTCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCC 290713 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 ||||||| ||||| | |||||| || || ||||||| || Sbjct 290714 ACGGCTCCAGGTAGATGGCAAAAGCCCCGGGTCTCTGAT 290752 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || || || ||||| ||||| || ||||| || || || || Sbjct 289342 ACCTCATCTTTGCTGGTATATTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTC 289401 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || | ||||| || || ||||| ||||||||||| ||| Sbjct 289402 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTG 289461 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| || || ||||| || Sbjct 289462 CCGGTCTCCGTCTGAGATTCAATGATAGC 289490 >seq2186 Length=3828881 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 2467915 AAAAATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCC 2467856 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | || | ||||| | || ||||||||||||| | || || || Sbjct 2467855 CAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGA 2467796 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || || |||||||| ||| ||||||| || || || || Sbjct 2467795 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTA 2467736 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || || || |||| || | |||||||| |||| Sbjct 2467735 CAACATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGCCTGAGGGGTGGTA 2467683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445700699604720