Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1389 107 2e-18 seq1587 96.9 3e-15 >seq1389 Length=9232658 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || || || ||||| || || | || || Sbjct 5780935 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 5780994 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || ||||||||||| ||||| || Sbjct 5780995 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 5781054 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 5781055 ACCACTCTCTCACC 5781068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 12804 AAAAATCAATATCTAGAGAAAATACATCATCGTCCTT-ATT-TGACATAACAGACATTTT 12861 ||||||| ||| |||| || |||| || | || ||| || |||||||| | Sbjct 5775361 AAAAATCTGCATCCAGAGTGAAGACATTGTC--CATTGATTCTGCCATAACAGCAAAACG 5775418 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| ||| | || ||||| || |||||||||||||| | |||||||| || Sbjct 5775419 TTGATATTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTC 5775478 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||| |||||||||||||||| Sbjct 5775479 CATGAAATCGAAAGGATTTT 5775498 >seq1587 Length=5570568 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || ||||| ||||| || || || ||||| | |||| ||| || Sbjct 1717224 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 1717165 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || ||||| || || ||||| ||||||||||| ||| Sbjct 1717164 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCTGCAAAAGCT 1717105 Query 13295 A 13295 | Sbjct 1717104 A 1717104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430920466616982