Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2552 159 8e-34 seq2186 145 2e-29 seq1389 113 1e-19 seq1587 111 4e-19 >seq2552 Length=4115196 Score = 159 bits (176), Expect = 8e-34 Identities = 133/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| || || | ||||| | ||||||||| Sbjct 1549864 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAGTATTTGGATACAGTATTCTTCATC 1549923 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 1549924 CTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 1549983 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 1549984 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 1550026 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78782 CAATTTCATATAGCTATAGGACATACTGCTATGTCTATCTATATAGATTGTCCTTATCCA 78841 || || ||| | |||| || || || || ||||||| ||||| |||||||||| || Sbjct 1552805 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 1552864 Query 78842 CGATGGGTGCAATGGGCTGTAATTATATACGCGGTTACTTTTATTATTTTGTTCGGTAAC 78901 |||| |||| |||| ||||||| | || || || || || ||| | ||||||||||| Sbjct 1552865 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTCGGTAAC 1552924 Query 78902 TTTTACTTCCGTACATATAAG 78922 || |||| || ||||||||| Sbjct 1552925 TTCTACTATCGGACATATAAG 1552945 >seq2186 Length=3828881 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || |||||||| || || | || ||||| || || || ||| Sbjct 2467715 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 2467774 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| ||||| || || || ||||| || ||||| ||||| || || Sbjct 2467775 GCAAAGATCAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 2467834 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 2467835 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 2467894 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 2467895 TTCACGAAGATCTGCATTTT 2467914 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || |||||||| || || | || ||||| || | || ||| Sbjct 2468085 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCGGCTTGCCA 2468144 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || || || || || || || ||||| ||||| || || Sbjct 2468145 GCAAAGATCAGCCTCTGCTGCTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 2468204 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 2468205 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 2468264 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 2468265 TTCACGAAGATCTGCATTTT 2468284 >seq1389 Length=9232658 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 5781056 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 5780997 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 5780996 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 5780937 Query 269258 GA 269259 || Sbjct 5780936 GA 5780935 >seq1587 Length=5570568 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 1717091 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGGATCTTCTTTTCTGGCTCTTTTGCA 1717150 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||||||| | Sbjct 1717151 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTC 1717210 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 1717211 ATCAGTAGAGATGA 1717224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151224455725028