Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1210 154 2e-32 seq462 113 6e-20 >seq1210 Length=2251642 Score = 154 bits (170), Expect = 2e-32 Identities = 221/310 (71%), Gaps = 1/310 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 1110654 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1110713 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| || || | ||| || |||||||| || |||||||| | |||| Sbjct 1110714 TATTGATTATTTCAAAGCCTACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 1110773 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || ||||| || || | ||| | || Sbjct 1110774 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 1110833 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | |||||||||||||| || || |||||||| || | | || | ||||| ||||| Sbjct 1110834 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 1110893 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 1110894 TAGCATCAATGTCTCCATAAAGTTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 1110953 Query 8978 TTATTAATAA 8987 ||||| |||| Sbjct 1110954 TTATTGATAA 1110963 Score = 123 bits (136), Expect = 4e-23 Identities = 175/244 (72%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 9624 GAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAAC 9683 ||||| ||| || || ||||| || || ||| ||| || ||||| || ||||||| | Sbjct 1112744 GAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGGAT 1112803 Query 9684 ATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCAC 9743 || || || | |||||||||||| ||||| || ||||| |||||||| | ||| || || Sbjct 1112804 GTCACAGACGCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAACCTGGGAC 1112863 Query 9744 CAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATA 9803 || ||||| |||| || ||||||| | ||| | ||| || | | ||||| || Sbjct 1112864 CAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGGTA 1112923 Query 9804 GATCATGTGCACCTG-GACA---TCTTTGACCGAGGGGGGATACATTTCACCGTCAATAA 9859 |||||| | ||| | || || || || | || ||||||||||| || ||||| | Sbjct 1112924 GATCATCT----CTGCGGCAGTGTCCTTTACTGTCGGTGGATACATTTCTCCATCAATCA 1112979 Query 9860 TCTG 9863 |||| Sbjct 1112980 TCTG 1112983 >seq462 Length=1760785 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || ||||||| ||||| |||||||||||||| | |||| Sbjct 964002 TCTTAACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGG 964061 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||||||||| || | ||| | |||| Sbjct 964062 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCTATCTCCACCATGC 964121 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| | || || || | || || || || ||||||| Sbjct 964122 TTTCTCCAAAAATACCATTGGGCTGAGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 964181 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| ||||||||||| || || Sbjct 964182 GAGCATCGATGTCTCCATATAG 964203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708420372301040